View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8552_low_12 (Length: 378)
Name: NF8552_low_12
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 1509678 - 1510019
Alignment:
| Q |
18 |
agcactgattgaggcatttcaaccattaaacatctttgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1509678 |
agcactgattgaggcatttcaaccattaaacatctctgattacaactcaatattttggattgctcacccagatggagccgcaattattgaccaagttgag |
1509777 |
T |
|
| Q |
118 |
caaaaattaaccttaaaacctgaaaagatgaaggtcactaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacg |
217 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1509778 |
caaaaattagccttaaaacctgaaa-gatgaaggc---------aattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacg |
1509867 |
T |
|
| Q |
218 |
agatgagaaagaaatcagctcaagagggacttaagaccactgatgaaggacttgaatgggggctttgaacctagacttaccattgaaacagttgttcttt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1509868 |
agatgagaaagaaatcagctcaagagggaattaagaccattggtgaaggacttgaatgggggctttggacctagacttaccattgaaacagttgttcttc |
1509967 |
T |
|
| Q |
318 |
gcattgtagccatataagattctttgataatttactttttattaagtattat |
369 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1509968 |
gcagtgtagccatataagattctttgataatttactttttattaagtattat |
1510019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 1478564 - 1478814
Alignment:
| Q |
28 |
gaggcatttcaaccattaaacatctttgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaa |
127 |
Q |
| |
|
||||| || |||||||||||||||| |||||| || ||||| || |||||||||||||||| |||| |||||||| | | ||||||||| |||| ||| |
|
|
| T |
1478564 |
gaggctttccaaccattaaacatctctgattataattcaatcttctggattgctcacccaggtggacccgcaattctagaccaagttgaagaaaagttag |
1478663 |
T |
|
| Q |
128 |
ccttaaaacctgaaaagatgaaggtcactaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaa |
227 |
Q |
| |
|
||||||||||||||| ||||||| ||||| | || | ||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
1478664 |
gcttaaaacctgaaaaaatgaaggccactagggaagtacttagtgaatatggtaacatgtcaagcgcatgtgtattgttcatcttggatgagatgagaaa |
1478763 |
T |
|
| Q |
228 |
gaaatcagctcaagagggacttaagaccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| | |||||| ||||| ||||| |
|
|
| T |
1478764 |
gaaatcggctcaagagggacttaaaaccacaggtgaaggccttgactgggg |
1478814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 37 - 278
Target Start/End: Original strand, 1482767 - 1483008
Alignment:
| Q |
37 |
caaccattaaacatctttgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaac |
136 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |||||||||||||| |||| |||| |||||||| ||| |||||||| ||||| ||| |||||||| |
|
|
| T |
1482767 |
caaccattaaacatttctgattacaactcaatcttttggattgctcatccaggtggacccgcaattcttgatcaagttgaacaaaagttaggcttaaaac |
1482866 |
T |
|
| Q |
137 |
ctgaaaagatgaaggtcactaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagc |
236 |
Q |
| |
|
||||||||||||| | ||||| || | ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||| | |
|
|
| T |
1482867 |
ctgaaaagatgaaagccactagagaagtacttagtgaatatggtaacatgtcaagtgcatgtgtattgtttatcttagatgagatgcgaaagaaatcttc |
1482966 |
T |
|
| Q |
237 |
tcaagagggacttaagaccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
||||||||| ||||||||||| | ||||| ||||| ||||| |
|
|
| T |
1482967 |
tcaagaggggcttaagaccacaggagaagggcttgattgggg |
1483008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 29 - 278
Target Start/End: Original strand, 1487236 - 1487485
Alignment:
| Q |
29 |
aggcatttcaaccattaaacatctttgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaac |
128 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||| |||| |||||||||| ||||||| ||| | |||||| | | ||| ||||| ||||| ||| | |
|
|
| T |
1487236 |
aggcattccaaccattaggcatctctgattacaatgcaattttttggattgtccacccaggcggacctgcaattttggaccatgttgaacaaaagttagc |
1487335 |
T |
|
| Q |
129 |
cttaaaacctgaaaagatgaaggtcactaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaag |
228 |
Q |
| |
|
|| ||||| ||||||||||||| ||||| | || | ||||||||||||||||| ||||||||||| ||||||||||| || || || || ||||||||| |
|
|
| T |
1487336 |
tttgaaaccggaaaagatgaaggccactagggaagtacttagtgaatatggtaacatgtcaagtgcttgtgtattgtttatattggatgaaatgagaaag |
1487435 |
T |
|
| Q |
229 |
aaatcagctcaagagggacttaagaccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
| ||||||||||||||||||| ||||||| | ||||||||| ||||||| |
|
|
| T |
1487436 |
agatcagctcaagagggacttgagaccacaggagaaggacttaaatgggg |
1487485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 278
Target Start/End: Original strand, 1499803 - 1500055
Alignment:
| Q |
26 |
ttgaggcatttcaaccattaaacatctttgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaatt |
125 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||| |||||||||||||| || | ||| | |||||| | | ||| |||||||||| || |
|
|
| T |
1499803 |
ttgaggcatttcaaccattaggaatctctgattataactcaatcttttggattgctcatccgggtggtcctgcaattctagatcaaattgagcaaaagtt |
1499902 |
T |
|
| Q |
126 |
aaccttaaaacctgaaaagatgaaggtcactaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgaga |
225 |
Q |
| |
|
| ||| ||| |||||||| ||| |||| || | || | ||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
1499903 |
aggcttgaaagctgaaaagttgagggtcgttagggaagtgcttagtgaatatggtaatatgtctagtgcatctgtattgttcatcttgaatgagatgaga |
1500002 |
T |
|
| Q |
226 |
aagaaatcagctcaagagggacttaagaccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
| |||||| ||||||| ||||||||||||| | |||||||| |||||||| |
|
|
| T |
1500003 |
aggaaatcgactcaagatcgacttaagaccacaggtgaaggacaagaatgggg |
1500055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 278
Target Start/End: Original strand, 1505572 - 1505792
Alignment:
| Q |
58 |
tacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatgaaggtcacta |
157 |
Q |
| |
|
||||||||||| || |||||||| ||||| | ||| | |||||| | | ||||| |||||||| ||| ||||||| |||||||||||||| | ||||| |
|
|
| T |
1505572 |
tacaactcaatcttctggattgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaaagccacta |
1505671 |
T |
|
| Q |
158 |
agtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggacttaagaccac |
257 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| ||| | ||||| || |
|
|
| T |
1505672 |
gagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcagctcaagatggattgaagactac |
1505771 |
T |
|
| Q |
258 |
tgatgaaggacttgaatgggg |
278 |
Q |
| |
|
| ||||||| ||||||||| |
|
|
| T |
1505772 |
cggagaaggacatgaatgggg |
1505792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 49 - 240
Target Start/End: Original strand, 1492754 - 1492945
Alignment:
| Q |
49 |
atctttgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatga |
148 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| ||||| | |||| | |||||| | | |||||| |||||||| ||| ||||||| || |||||||||| |
|
|
| T |
1492754 |
atctctgattacaactcaatcttttggattgcacaccctggtggacctgcaattttagaccaagtagagcaaaagttagccttaaagcccgaaaagatga |
1492853 |
T |
|
| Q |
149 |
aggtcactaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaa |
240 |
Q |
| |
|
| ||| | | | || ||||||||||| |||||||||||||||||||||||||| ||||| || || ||||||||||||||| ||||| |
|
|
| T |
1492854 |
gagccacacgggaggtgctaagtgaatatggaaatatgtcaagtgcatgtgtattgtttatcttggatgaaatgagaaagaaatcaactcaa |
1492945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 26 - 278
Target Start/End: Complemental strand, 24163349 - 24163097
Alignment:
| Q |
26 |
ttgaggcatttcaaccattaaacatctttgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaatt |
125 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||||||||||| ||||||||||||||| | | |||| |||||||| | | | || ||||| |||| || |
|
|
| T |
24163349 |
ttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaattgaggaaaagtt |
24163250 |
T |
|
| Q |
126 |
aaccttaaaacctgaaaagatgaaggtcactaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgaga |
225 |
Q |
| |
|
| |||| |||||||||||||||| | ||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
24163249 |
agccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgaga |
24163150 |
T |
|
| Q |
226 |
aagaaatcagctcaagagggacttaagaccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
|| ||||| |||||||| ||||| |||||||| | ||||| ||||||||||| |
|
|
| T |
24163149 |
aacaaatcggctcaagatggactaaagaccacaggagaagggcttgaatgggg |
24163097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 54 - 278
Target Start/End: Original strand, 44129165 - 44129389
Alignment:
| Q |
54 |
tgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatgaaggtc |
153 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||| | |||| | |||||| | | |||||||||||||| ||| |||||||||||||||||||||| | | |
|
|
| T |
44129165 |
tgattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaacctgaaaagatgaaagcc |
44129264 |
T |
|
| Q |
154 |
actaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggacttaaga |
253 |
Q |
| |
|
|| | || | |||||||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
44129265 |
accagagaagtgcttagtgaatatggaaatatgtcaagtgcttgtgttttgtttatcttagatgaaatgagaaagaagtcagctcaagatggactgaaga |
44129364 |
T |
|
| Q |
254 |
ccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
|||| | ||||||||||| ||||| |
|
|
| T |
44129365 |
ccacgggagaaggacttgagtgggg |
44129389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 274
Target Start/End: Original strand, 44133370 - 44133590
Alignment:
| Q |
54 |
tgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatgaaggtc |
153 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||| | |||| | |||||| | | |||||||||||||| ||| |||||||||||||||||||||| | | |
|
|
| T |
44133370 |
tgattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaacctgaaaagatgaaagcc |
44133469 |
T |
|
| Q |
154 |
actaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggacttaaga |
253 |
Q |
| |
|
|| | || | |||||||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| ||| | |||| |
|
|
| T |
44133470 |
accagagaagtgcttagtgaatatggaaatatgtcaagtgcctgtgttttgtttatcttagatgaaatgagaaagaagtcagctcaagatggattgaaga |
44133569 |
T |
|
| Q |
254 |
ccactgatgaaggacttgaat |
274 |
Q |
| |
|
|||| | ||||||||||||| |
|
|
| T |
44133570 |
ccacaggagaaggacttgaat |
44133590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 54 - 272
Target Start/End: Original strand, 44141792 - 44142010
Alignment:
| Q |
54 |
tgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatgaaggtc |
153 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||| | |||| | |||||| | | |||||||||||||| ||| |||||||||||||||||||||| | | |
|
|
| T |
44141792 |
tgattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaacctgaaaagatgaaagcc |
44141891 |
T |
|
| Q |
154 |
actaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggacttaaga |
253 |
Q |
| |
|
|| | || | |||||||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| ||| | |||| |
|
|
| T |
44141892 |
accagagaagtgcttagtgaatatggaaatatgtcaagtgcctgtgttttgtttatcttagatgaaatgagaaagaagtcagctcaagatggattgaaga |
44141991 |
T |
|
| Q |
254 |
ccactgatgaaggacttga |
272 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
44141992 |
ccacgggagaaggacttga |
44142010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 278
Target Start/End: Complemental strand, 46706519 - 46706295
Alignment:
| Q |
54 |
tgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatgaaggtc |
153 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| | ||| | |||||| | | ||||| |||||||| ||| |||| || ||||||||||||| | | |
|
|
| T |
46706519 |
tgattacaactcaatcttttggattgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatgagagcc |
46706420 |
T |
|
| Q |
154 |
actaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggacttaaga |
253 |
Q |
| |
|
|||| || | |||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||||||||||||| ||||||| || || |||| |
|
|
| T |
46706419 |
actagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggtctgaaga |
46706320 |
T |
|
| Q |
254 |
ccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
| || | ||||||||||||||||| |
|
|
| T |
46706319 |
caacaggagaaggacttgaatgggg |
46706295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 54 - 278
Target Start/End: Complemental strand, 5289228 - 5289004
Alignment:
| Q |
54 |
tgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatgaaggtc |
153 |
Q |
| |
|
||||||||||||||| ||||||||||| || || | |||| | |||||| | | ||||| |||||||| ||| ||||||| |||||||||||||| | |
|
|
| T |
5289228 |
tgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtggagcaaaagttagccttaaagcctgaaaagatgaatgca |
5289129 |
T |
|
| Q |
154 |
actaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggacttaaga |
253 |
Q |
| |
|
|||| || | || ||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||||||||||||| | ||| ||| | |||| |
|
|
| T |
5289128 |
actagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaaccatagacggattgaaga |
5289029 |
T |
|
| Q |
254 |
ccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
| |||| ||||||||||||||||| |
|
|
| T |
5289028 |
caactggagaaggacttgaatgggg |
5289004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 54 - 278
Target Start/End: Original strand, 5310988 - 5311212
Alignment:
| Q |
54 |
tgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatgaaggtc |
153 |
Q |
| |
|
||||||||||||||| ||||||||||| || || | |||| | |||||| | | ||||| |||||||| ||| ||||||| |||||||||||||| | |
|
|
| T |
5310988 |
tgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgca |
5311087 |
T |
|
| Q |
154 |
actaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggacttaaga |
253 |
Q |
| |
|
|||| || | || ||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||||||||||||| ||||| | ||| | |||| |
|
|
| T |
5311088 |
actagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaaaacggattgaaga |
5311187 |
T |
|
| Q |
254 |
ccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
| || | ||||||||||| ||||| |
|
|
| T |
5311188 |
caacgggagaaggacttgagtgggg |
5311212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 54 - 278
Target Start/End: Original strand, 5315702 - 5315926
Alignment:
| Q |
54 |
tgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatgaaggtc |
153 |
Q |
| |
|
||||||||||||||| ||||||||||| || || | |||| | |||||| | | ||||| |||||||| ||| ||||||| |||||||||||||| | |
|
|
| T |
5315702 |
tgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtggagcaaaagttagccttaaagcctgaaaagatgaatgca |
5315801 |
T |
|
| Q |
154 |
actaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggacttaaga |
253 |
Q |
| |
|
|||| || | || ||||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||||||| || |||| ||| | |||| |
|
|
| T |
5315802 |
actagagaagtgctcagtgaatatggaaatatgtcaagtgcgtgtgttttgtttatcttagatgaaatgagaaagaaatcaactaaagacggattgaaga |
5315901 |
T |
|
| Q |
254 |
ccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
| || | ||||||||||||||||| |
|
|
| T |
5315902 |
caacgggagaaggacttgaatgggg |
5315926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 278
Target Start/End: Original strand, 5303087 - 5303311
Alignment:
| Q |
54 |
tgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatgaaggtc |
153 |
Q |
| |
|
||||||||||||||| ||||||||||| || || | |||| | |||||| | | ||||| |||||||| ||| | || || |||||||||||||| | |
|
|
| T |
5303087 |
tgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttatcattgaagcctgaaaagatgaatgca |
5303186 |
T |
|
| Q |
154 |
actaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggacttaaga |
253 |
Q |
| |
|
|||| || | || ||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||||||||||||| || |||| || | |||| |
|
|
| T |
5303187 |
actagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactaaagatgggttgaaga |
5303286 |
T |
|
| Q |
254 |
ccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
| |||| ||||||||||||||||| |
|
|
| T |
5303287 |
caactggagaaggacttgaatgggg |
5303311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 278
Target Start/End: Original strand, 5284899 - 5285123
Alignment:
| Q |
54 |
tgattacaactcaatattttggattgctcacccagatggagccgcaattattggccaagttgagcaaaaattaaccttaaaacctgaaaagatgaaggtc |
153 |
Q |
| |
|
||||||||||||||| ||||||||||| || || | |||| | |||||| | | ||||| |||||||| ||| |||| || |||||||||||||| | |
|
|
| T |
5284899 |
tgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttagccttgaagcctgaaaagatgaatgca |
5284998 |
T |
|
| Q |
154 |
actaagtaaattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggacttaaga |
253 |
Q |
| |
|
|| | || | || ||||||||||| |||||||||||||||||||| ||||| ||||| || || ||||||||||||||| ||||| | ||| | |||| |
|
|
| T |
5284999 |
accagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttggatgaaatgagaaagaaatcaactcaaaacggattgaaga |
5285098 |
T |
|
| Q |
254 |
ccactgatgaaggacttgaatgggg |
278 |
Q |
| |
|
| || | ||||||||||||||||| |
|
|
| T |
5285099 |
caacgggagaaggacttgaatgggg |
5285123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 37858783 - 37858725
Alignment:
| Q |
166 |
cttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgag |
224 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||| || |||||||| || |||||||| |
|
|
| T |
37858783 |
cttagcgagtatggtaacatgtcaagtgcatgtgtgttattcatcttggatgagatgag |
37858725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 37862809 - 37862741
Alignment:
| Q |
166 |
cttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatca |
234 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| | |||||||| || |||||||| | ||||||| |
|
|
| T |
37862809 |
cttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaaatca |
37862741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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