View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_low_14 (Length: 328)
Name: NF8552_low_14
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_14 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 42257973 - 42257647
Alignment:
| Q |
1 |
gatcttccttggcacaagatattccctatggcagttatgtggaggaacactctgtgtacttggcctctctttagtcctactttctgacacttgggatgtt |
100 |
Q |
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| T |
42257973 |
gatcttccttggtacaagatattccctatggcagttatgtggaggaacactctgtgtacttggcctctctttagtcctattttctgacacttgggatggt |
42257874 |
T |
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| Q |
101 |
ggtggtggtggtggaggtgacattcatttattcaacctgtttaggttcaaaattttaatcaattaattggcaaggattttggtcctaattacaattttca |
200 |
Q |
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| T |
42257873 |
ggtggtggtggtggaggtgacattcatttattcaacctgtttaggttcaaaattttaatcaattaattggcaaggattttggtcctaattacaattttca |
42257774 |
T |
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| Q |
201 |
ggtggatcaaaacctgtcttgggtgatgtacttgttattgtagggacagttttctatgcaataagcaatgttgttgaggtagtacaaattattgagtaca |
300 |
Q |
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| T |
42257773 |
ggtggatcaaaacctgtcttgggtgatgtacttgttattgtagggacagttttctatgcaataagcaatgttgttgaggtagt-caaattattgagtaca |
42257675 |
T |
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| Q |
301 |
aattttatgtatccgtctgcacgctagt |
328 |
Q |
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| T |
42257674 |
aattttaagtatccgtctgcacgctagt |
42257647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 42263472 - 42263180
Alignment:
| Q |
1 |
gatcttccttggcacaagatattccctatggcagttatgtggaggaacactctgtgtacttggcctctctttagtcctactttctgacacttgggatgtt |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
42263472 |
gatcttccttggtacaagatattccctatggcagttatgtggaggaacactctgtgtacttggcctctctttagtcctattttctgacacttgggatggt |
42263373 |
T |
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| Q |
101 |
ggtggtggtggtgg---aggtgacattcatttattcaacctgtttaggttcaaaattttaatcaattaattggcaaggattttggtcctaattacaattt |
197 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42263372 |
ggtggtggtggtggtggaggtgacattcatttattcaacctgtttaggttcaaaattttaatcaattaattggcaaggattttggtcctaattacaattt |
42263273 |
T |
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| Q |
198 |
tcaggtggatcaaaacctgtcttgggtgatgtacttgttattgtagggacagttttctatgcaataagcaatgttgttgaggtagtacaaatt |
290 |
Q |
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| T |
42263272 |
tcaggtggatcaaaacctatcttgggtgatgtacttgttattgtagggacagttttctttgcagtaagcaatgttgttgaggtagtacaaatt |
42263180 |
T |
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