View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_low_16 (Length: 310)
Name: NF8552_low_16
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 31464621 - 31464330
Alignment:
| Q |
1 |
gtttcgtgtttacttgggtgaaagtggactcccaatccaagatcaaccttctataggcaatcaaaacggcgcagaaagtgatccaattctgcatttcatc |
100 |
Q |
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| T |
31464621 |
gtttcgtgtttacttgggtgaaagtggactcccaatccaagatcaaccttctataggcaatcaaaacggcgcagaaagtgatccaattctgcatttcatc |
31464522 |
T |
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| Q |
101 |
ccaaataatacggcagcaccaagtgttgtggaagatccaattagacatttctaccaaaccaatccaagtaacgagaacaggaagacgatggttagaaaac |
200 |
Q |
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| T |
31464521 |
ccaaataatacggcagcaccaagtgttgtggaagatccaattagacatttctaccaaaccaatccaagtaacgagaacaggaagacgatggttagaaaac |
31464422 |
T |
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| Q |
201 |
tcattgattggattattggaagggtctgaatgtgccatcatagttgatgttggagatgaagatccgaacaattgtctgctagccctttattt |
292 |
Q |
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| T |
31464421 |
tcattgattggattattggaagggtctgaatgtgccatcatagttgatgttggagatgaagatccgaacaattgtctgctagccctttattt |
31464330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 31484107 - 31484401
Alignment:
| Q |
1 |
gtttcgtgtttacttgggtgaaagtggactcccaatccaagatcaaccttctataggcaatcaaaacggcgcagaaagtgatccaattctgcatttcatc |
100 |
Q |
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||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31484107 |
gtttcgtttttacccgggtgaaagcggactcccaatccaagatcaaccttccataggcaatcaaaacggcgcagaaagtgatccaattctgcatttcatc |
31484206 |
T |
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| Q |
101 |
ccaaataatacggcagcaccaagtgttgtggaagatccaattagacatttctaccaaaccaatccaagtaacgagaac---aggaagacgatggttagaa |
197 |
Q |
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||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |
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| T |
31484207 |
ccaaataataccgcggcatcaagtgttgaagaagatccaattagacatttctaccaaaccaatcctagtaacgagaacaagaagaagacgatggttagaa |
31484306 |
T |
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| Q |
198 |
aactcattgattggattattggaagggtctgaatgtgccatcatagttgatgttggagatgaagatccgaacaattgtctgctagccctttattt |
292 |
Q |
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|| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | ||| |||| ||||||| |||||||| |
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| T |
31484307 |
aaatcattgattggattattggaagggtctgaatgtgcaaacatagttgatgttggagatgaagatgcaaaccattgattgctagctctttattt |
31484401 |
T |
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