View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_low_18 (Length: 283)
Name: NF8552_low_18
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 12763949 - 12764197
Alignment:
| Q |
14 |
agagcatatgaggttgtctgcatttggaatgaaaggattttggtttgatgaattgttcatcacccactgccaaaatcggaagaacaaacgatattttaga |
113 |
Q |
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| T |
12763949 |
agagcatatgaggttgtctgcattgggaatgaaaggattttggtttgatgaaatgttcatcacccactgccaaaattcgaagaacaaacgatattttaga |
12764048 |
T |
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| Q |
114 |
aatgacattactcggataaaggagaaaaactaatctaacatgctt-nnnnnnngagataattcataattttgtctnnnnnnnccagagatataataaaaa |
212 |
Q |
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| T |
12764049 |
aatgacatgactcagataaaggagaaaaactaatctaacatgcttaaaaaaatgagataattcataattttgtctaaaaaaaccagagatataataaaaa |
12764148 |
T |
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| Q |
213 |
atgagacaaacctgagaaacaagaacattaatgccagcatgcttggcat |
261 |
Q |
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| T |
12764149 |
atgagacaaacctgagaaacaagaacattaatgccagcatgcttggcat |
12764197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 12735233 - 12735308
Alignment:
| Q |
14 |
agagcatatgaggttgtctgcatttggaatgaaaggattttggtttgatgaattgttcatcacccactgccaaaat |
89 |
Q |
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| T |
12735233 |
agagcatataaggttgtctgcattggaaatgaaaggactctggtttgatgcatcgttcatcatccactgccaaaat |
12735308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 12735884 - 12735946
Alignment:
| Q |
196 |
cagagatataataaaaaatgagacaaacctgagaaacaagaacattaatgccagcatgcttgg |
258 |
Q |
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| T |
12735884 |
cagagagataatgaaaaataagactcacatgagaaacaagcacattaatgccagcatgcttgg |
12735946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 16622646 - 16622616
Alignment:
| Q |
123 |
actcggataaaggagaaaaactaatctaaca |
153 |
Q |
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| T |
16622646 |
actcggataaaggagaaaaactaatctaaca |
16622616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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