View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8552_low_2 (Length: 542)

Name: NF8552_low_2
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8552_low_2
NF8552_low_2
[»] chr8 (14 HSPs)
chr8 (10-284)||(10565608-10565883)
chr8 (268-524)||(10565240-10565493)
chr8 (276-443)||(44042514-44042676)
chr8 (316-452)||(12787816-12787948)
chr8 (303-451)||(20142432-20142576)
chr8 (314-450)||(4507917-4508049)
chr8 (324-403)||(40464422-40464501)
chr8 (307-392)||(6904192-6904277)
chr8 (300-375)||(41646590-41646665)
chr8 (278-408)||(24457835-24457965)
chr8 (278-403)||(1162703-1162824)
chr8 (332-398)||(3100168-3100234)
chr8 (314-403)||(43238145-43238234)
chr8 (319-383)||(40914580-40914644)
[»] chr3 (6 HSPs)
chr3 (307-405)||(29212711-29212809)
chr3 (319-403)||(36494188-36494273)
chr3 (409-450)||(11465720-11465761)
chr3 (278-403)||(21813124-21813249)
chr3 (277-383)||(49682200-49682306)
chr3 (304-384)||(46895910-46895990)
[»] chr6 (6 HSPs)
chr6 (276-451)||(10570908-10571079)
chr6 (307-403)||(29988326-29988420)
chr6 (342-392)||(2350296-2350346)
chr6 (315-401)||(5678476-5678562)
chr6 (345-382)||(1252754-1252791)
chr6 (307-360)||(31556753-31556806)
[»] chr5 (12 HSPs)
chr5 (277-407)||(11010253-11010383)
chr5 (314-407)||(40944271-40944364)
chr5 (277-451)||(248428-248599)
chr5 (335-451)||(14116478-14116590)
chr5 (307-452)||(42877212-42877353)
chr5 (408-451)||(30327584-30327627)
chr5 (332-401)||(15206517-15206585)
chr5 (348-403)||(43390370-43390425)
chr5 (277-383)||(18988786-18988892)
chr5 (294-383)||(20125639-20125727)
chr5 (332-392)||(20721277-20721337)
chr5 (338-394)||(42308060-42308116)
[»] chr1 (13 HSPs)
chr1 (313-407)||(46895941-46896035)
chr1 (316-450)||(44584056-44584185)
chr1 (361-408)||(9500923-9500970)
chr1 (276-403)||(44920231-44920358)
chr1 (277-451)||(14758528-14758698)
chr1 (307-403)||(18038906-18039002)
chr1 (332-403)||(18032202-18032273)
chr1 (307-451)||(19547046-19547186)
chr1 (324-447)||(26533730-26533849)
chr1 (307-396)||(26765974-26766063)
chr1 (419-451)||(38293977-38294009)
chr1 (415-451)||(45925461-45925497)
chr1 (307-359)||(46729229-46729281)
[»] scaffold0172 (1 HSPs)
scaffold0172 (278-403)||(13478-13603)
[»] chr7 (9 HSPs)
chr7 (303-451)||(44319848-44319992)
chr7 (314-403)||(3298231-3298320)
chr7 (348-396)||(4507909-4507957)
chr7 (332-403)||(5495992-5496063)
chr7 (308-403)||(41898267-41898362)
chr7 (307-369)||(6771884-6771946)
chr7 (361-403)||(24557747-24557789)
chr7 (338-383)||(27156877-27156922)
chr7 (363-449)||(43211011-43211093)
[»] chr2 (6 HSPs)
chr2 (307-403)||(11580418-11580514)
chr2 (277-403)||(32770737-32770863)
chr2 (345-403)||(11252723-11252781)
chr2 (278-451)||(27921859-27922029)
chr2 (307-403)||(33962940-33963036)
chr2 (313-401)||(36260442-36260530)
[»] chr4 (10 HSPs)
chr4 (307-447)||(49011880-49012016)
chr4 (314-403)||(7388788-7388877)
chr4 (342-452)||(43809118-43809223)
chr4 (316-452)||(19652601-19652733)
chr4 (277-403)||(38949026-38949152)
chr4 (276-403)||(46506338-46506467)
chr4 (332-392)||(40781432-40781492)
chr4 (314-446)||(38682631-38682759)
chr4 (411-452)||(49360012-49360053)
chr4 (415-451)||(14452233-14452269)
[»] scaffold0009 (1 HSPs)
scaffold0009 (334-396)||(25582-25644)
[»] scaffold0027 (1 HSPs)
scaffold0027 (277-403)||(122432-122558)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 10565883 - 10565608
Alignment:
Q  10 agattattctactaaaagaagtggtccaataaggataattgtggtcctctcactcttgttacactttccctattgggcaaactgttggtttggtggcaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10565883 agattattctactaaaagaagtggtccaataaggataattgtggtcctctcactcttgttacactttccctattgggcaaactgttggtttggtggcaat 10565784  T
Q  110 tttatt-tctaattaatcttctttcattgtcatatatgtagccattgatgttgatcgaaagacaaaaaagggagagttaagtttgtacaatatctaccca 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10565783 tttattgtctaattaatcttctttcattgtcatatatgtagccattgatgttgatcgaaagacaaaaaagggagagttaagtttgtacaatatctaccca 10565684  T
Q  209 taagggcacaaaacccttctatgaataatagtactgttttgcattggcttttcatgatgatcaaaatagaaatgtt 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10565683 taagggcacaaaacccttctatgaataatagtactgttttgcattggcttttcatgatgatcaaaatagaaatgtt 10565608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 268 - 524
Target Start/End: Complemental strand, 10565493 - 10565240
Alignment:
Q  268 atcaaaatagaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattg 367  Q
    |||||||||||||||||||| |||||||||||  |||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||     
T  10565493 atcaaaatagaaatgttaaccagtgtcttaagagtattatttaaagactttagatagtaaatttttatggaaatttgtgcattcaatacatcaaaaatta 10565394  T
Q  368 aagtattagactttttcaataaatagtttcttaatttagataaaattcttaaagagtgttcttaggacactcgttagcaaga-cctggtcaaaataatta 466  Q
    |||||||||||||||||||| ||||||||||||||||||    ||||||||||||||||||||||||||||||||| ||| | |||  ||||||||||||    
T  10565393 aagtattagactttttcaatgaatagtttcttaatttag----aattcttaaagagtgttcttaggacactcgttaacaacaccctaatcaaaataatta 10565298  T
Q  467 cttgagaagttaaagaacttctcgttgagggagtaaattctccaatgcatgacattat 524  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  10565297 cttgacaagttaaagaacttcttgtcgagggagtaaattctccaatgcatgacattat 10565240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 276 - 443
Target Start/End: Complemental strand, 44042676 - 44042514
Alignment:
Q  276 agaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtatta 375  Q
    |||||||||||| ||||| ||||||||||| ||||| || |||| || |||| || |||| |||||||||||||||||| |||   |||||||||||||     
T  44042676 agaaatgttaacaagtgt-ttaaggatattttttaaagattttaaatagtaagtttttatagaaatttgtgcattcaatgcattggaaattgaagtattg 44042578  T
Q  376 gactttttcaataaatagtttcttaatttagataaaattcttaaagagtgttcttaggacactcgtta 443  Q
     ||||||||||| |||||||||||||||  |    ||| |||||||||||| |||||| |||||||||    
T  44042577 aactttttcaatgaatagtttcttaattatg----aatccttaaagagtgtccttagggcactcgtta 44042514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 452
Target Start/End: Complemental strand, 12787948 - 12787816
Alignment:
Q  316 tttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttagataaaattc 415  Q
    ||||||| |||| || ||||| ||||||||||||| |||  ||   ||||||||| |||| |||||||||||||||| ||| ||||||||||    ||||    
T  12787948 tttagatagtaagtttttatgaaaatttgtgcatttaatgaattggaaattgaagcattatactttttcaataaataattttttaatttaga----attc 12787853  T
Q  416 ttaaagagtgttcttaggacactcgttagcaagacct 452  Q
    ||||||||| |||||| ||||||||||| ||||||||    
T  12787852 ttaaagagtattcttaagacactcgttaacaagacct 12787816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 451
Target Start/End: Original strand, 20142432 - 20142576
Alignment:
Q  303 attatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaat 402  Q
    ||||||||| ||||||| ||  |||||| |||||| || ||||||||| ||| |||| |||||| |||| ||| ||||||| || ||||| |||||||||    
T  20142432 attatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaactttttaaaaaaataatttcttaat 20142531  T
Q  403 ttagataaaattcttaaagagtgttcttaggacactcgttagcaagacc 451  Q
    | | |||     |||||||||||| |||||||||||||||| |||||||    
T  20142532 tgaaatac----cttaaagagtgtccttaggacactcgttaacaagacc 20142576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 450
Target Start/End: Original strand, 4507917 - 4508049
Alignment:
Q  314 actttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttagataaaat 413  Q
    ||||||||| |||| || ||||||||| ||  ||||| ||| ||||| |||||||| ||| |   |||||||||||||||||||||||||     |  ||    
T  4507917 actttagatggtaagtttttatggaaacttacgcatttaatgcatcagaaattgaaatatgatgttttttcaataaatagtttcttaatt----gactat 4508012  T
Q  414 tcttaaagagtgttcttaggacactcgttagcaagac 450  Q
     |||||||||||  |||||||||||||||||||||||    
T  4508013 ccttaaagagtgcccttaggacactcgttagcaagac 4508049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 40464422 - 40464501
Alignment:
Q  324 gtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||||| |||||| || |||||||||||| ||||| ||||||||| ||||| || |||||||| |||||||| ||||||    
T  40464422 gtaaatttttatggtaacttgtgcattcaaaacatcgaaaattgaaatattaaacattttcaatgaatagttttttaatt 40464501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 6904277 - 6904192
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaata 392  Q
    ||||| |||||||||| |||| || ||||||||| |||||| |||||| ||||  ||||||||| |||| ||||||||||| ||||    
T  6904277 tttaaagactttagatagtaattttttatggaaacttgtgcgttcaatgcatcggaaattgaagcattaaactttttcaatgaata 6904192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 41646665 - 41646590
Alignment:
Q  300 gatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtatta 375  Q
    |||||| ||||| |||||||||| |||| || ||||| ||| ||||||||||||| ||  ||||||||||||||||    
T  41646665 gatattctttaaggactttagatagtaagtttttatgaaaacttgtgcattcaattcaataaaaattgaagtatta 41646590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 408
Target Start/End: Complemental strand, 24457965 - 24457835
Alignment:
Q  278 aaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattaga 377  Q
    |||||||||||| | || | |||| ||| |||||  |||||| || |||| || ||||| ||| |||||| || ||| |||   ||||||||  ||||||    
T  24457965 aaatgttaactattatccttaggacattttttaaaaactttaaatagtaagtttttatgaaaacttgtgcttttaatgcatttgaaattgaaacattaga 24457866  T
Q  378 ctttttcaataaatagtttcttaatttagat 408  Q
    |||||||||| |||||||| |||||||||||    
T  24457865 ctttttcaatgaatagttttttaatttagat 24457835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 403
Target Start/End: Original strand, 1162703 - 1162824
Alignment:
Q  278 aaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattaga 377  Q
    ||||| |||| |||||| |||| ||||| ||||| |||||| |||   ||||| ||||  ||| ||||||||| |||  ||  |||| ||||||||||||    
T  1162703 aaatgctaacgagtgtcctaagaatattttttaaggacttttgat---aaatttttataaaaaattgtgcatttaatgtatggaaaagtgaagtattaga 1162799  T
Q  378 ctttttcaataaatagtttcttaatt 403  Q
    |||||| |||||||| ||||||||||    
T  1162800 cttttttaataaata-tttcttaatt 1162824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 3100168 - 3100234
Alignment:
Q  332 ttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttct 398  Q
    |||||||||||| || ||||||| ||||||||||||||||| | ||| ||||   ||||||||||||    
T  3100168 ttatggaaatttatgaattcaatgcatcaaaaattgaagtacttgacatttttggtaaatagtttct 3100234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 43238145 - 43238234
Alignment:
Q  314 actttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    |||||| || ||||||| ||||||||| || | |||| ||| |||| ||||||||||| ||| ||||||| ||  |||| ||||||||||    
T  43238145 actttaaatagtaaatttttatggaaaattctacatttaatgcatcgaaaattgaagtgttaaacttttttaaggaataatttcttaatt 43238234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 40914580 - 40914644
Alignment:
Q  319 agatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagacttttt 383  Q
    |||| ||||||| ||||| ||||||||| ||| ||| |||  ||||||||||||||||| |||||    
T  40914580 agatagtaaatttttatgaaaatttgtgaatttaatgcattgaaaattgaagtattagatttttt 40914644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 307 - 405
Target Start/End: Complemental strand, 29212809 - 29212711
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaattta 405  Q
    ||||| ||||||||||  |||||| |||| |||| ||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  29212809 tttaaagactttagatattaaatttttatagaaacttgtgcattcaatacatcataaattgaagcattagactttttcaatgaatagtttcttaattta 29212711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 403
Target Start/End: Complemental strand, 36494273 - 36494188
Alignment:
Q  319 agatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattaga-ctttttcaataaatagtttcttaatt 403  Q
    |||| |||| || ||||||||| |||||||||||||||||   ||||||||||||||||  ||||||||| |||||||||||||||    
T  36494273 agatagtaagtttttatggaaacttgtgcattcaatacattggaaattgaagtattagatttttttcaatgaatagtttcttaatt 36494188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 450
Target Start/End: Original strand, 11465720 - 11465761
Alignment:
Q  409 aaaattcttaaagagtgttcttaggacactcgttagcaagac 450  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  11465720 aaaatccttaaagagtgttcttaggacactcgttaacaagac 11465761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 403
Target Start/End: Original strand, 21813124 - 21813249
Alignment:
Q  278 aaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattaga 377  Q
    |||||||||  |||||| |||||  | | ||||| || |||| || ||||||| ||||||||| || |||||||||| ||||  || || |||| ||| |    
T  21813124 aaatgttaatgagtgtcctaagggcactctttaaggattttaaatagtaaatttttatggaaaattatgcattcaatgcatcggaatttaaagtgttaaa 21813223  T
Q  378 ctttttcaataaatagtttcttaatt 403  Q
    |||||||||| |||| ||||||||||    
T  21813224 ctttttcaatgaataatttcttaatt 21813249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 383
Target Start/End: Complemental strand, 49682306 - 49682200
Alignment:
Q  277 gaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattag 376  Q
    ||||||||||| | |||| ||||  |||| ||||| ||||||| || ||||||| |||| |||| ||||||||||||| | ||  |||||||| | |||     
T  49682306 gaaatgttaacgaatgtcctaagagtattttttaaggactttaaatagtaaatttttatagaaaattgtgcattcaatgcttcggaaattgaaatgttaa 49682207  T
Q  377 acttttt 383  Q
    |||||||    
T  49682206 acttttt 49682200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 46895910 - 46895990
Alignment:
Q  304 ttatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttc 384  Q
    ||||||||| || ||| || |||| || ||||  |||||| |||||||||| |||||||||||||||| ||  ||||||||    
T  46895910 ttatttaataaccttaaatagtaagtttttataaaaatttatgcattcaatgcatcaaaaattgaagtctttaactttttc 46895990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 276 - 451
Target Start/End: Original strand, 10570908 - 10571079
Alignment:
Q  276 agaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtatta 375  Q
    ||||||| |||| | |||| |||||| | | ||||| |||||||  | ||||||| |||| ||||||||| |||||||| |||||||||||||||||||     
T  10570908 agaaatgctaacgaatgtcataaggacactctttaaagactttatttagtaaatttttatagaaatttgttcattcaatgcatcaaaaattgaagtattg 10571007  T
Q  376 gactttttcaataaatagtttcttaatttagataaaattcttaaagagtgttcttaggacactcgttagcaagacc 451  Q
     || |||||||| ||||||||||||||| ||    ||| |||||||||||| |||| || ||||||||| ||||||    
T  10571008 aacattttcaatgaatagtttcttaattaag----aatccttaaagagtgtccttatgaaactcgttagtaagacc 10571079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 403
Target Start/End: Original strand, 29988326 - 29988420
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||| ||||||| || ||||||| ||||||||| |||  |||||||||||||||||||||||  |||| ||||||| ||  |||| ||||||||||    
T  29988326 tttaaggactttaaatagtaaatttttatggaaaattgaacattcaatacatcaaaaattgaa--attatacttttttaaagaataatttcttaatt 29988420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 2350346 - 2350296
Alignment:
Q  342 ttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaata 392  Q
    |||| ||||||||||||| |||||||| ||||||||  |||||||||||||    
T  2350346 ttgtacattcaatacatcgaaaattgacgtattagatattttcaataaata 2350296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 5678476 - 5678562
Alignment:
Q  315 ctttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaa 401  Q
    |||||||| ||||||| |||| ||||||| |  |||||||  ||  ||||||||||||||| ||||||| ||| |||| ||||||||    
T  5678476 ctttagatagtaaatttttatagaaatttatatattcaatgtattgaaaattgaagtattaaacttttttaatgaataatttcttaa 5678562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 382
Target Start/End: Complemental strand, 1252791 - 1252754
Alignment:
Q  345 tgcattcaatacatcaaaaattgaagtattagactttt 382  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  1252791 tgcattcaatgcatcataaattgaagtattagactttt 1252754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 31556753 - 31556806
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatca 360  Q
    ||||| || ||||||| ||||||| ||||| ||||||||||||| |||||||||    
T  31556753 tttaaagattttagatagtaaatttttatgtaaatttgtgcatttaatacatca 31556806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 277 - 407
Target Start/End: Complemental strand, 11010383 - 11010253
Alignment:
Q  277 gaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattag 376  Q
    |||||| |||| |||| | |||||  ||| ||||| ||||| |||| |||  || ||||||||| ||||| ||||||| ||||| |||||||||||||||    
T  11010383 gaaatgctaacgagtggcctaagggcattttttaaggacttcagatagtatgtttttatggaaagttgtgtattcaatgcatcagaaattgaagtattag 11010284  T
Q  377 actttttcaataaatagtttcttaatttaga 407  Q
    ||||||||||| |||||||||||||||||||    
T  11010283 actttttcaatgaatagtttcttaatttaga 11010253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 314 - 407
Target Start/End: Original strand, 40944271 - 40944364
Alignment:
Q  314 actttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttaga 407  Q
    ||||||||| ||||||| |||||||||||||| |||||||| |||| |||||||||| |||| ||||||||||| |||| ||||||||||||||    
T  40944271 actttagatagtaaatttttatggaaatttgtacattcaatgcatcgaaaattgaagcattatactttttcaatgaataatttcttaatttaga 40944364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 277 - 451
Target Start/End: Original strand, 248428 - 248599
Alignment:
Q  277 gaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattag 376  Q
    |||||||||||||||| |||||||  | | ||||| ||||| | || ||||||| ||||||||| ||||||||||||||||||  |||||||||| |||     
T  248428 gaaatgttaactagtgccttaagggcactctttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatacatcggaaattgaagtgttaa 248527  T
Q  377 ac-tttttcaataaatagtttcttaatttagataaaattcttaaagagtgttcttaggacactcgttagcaagacc 451  Q
    || ||||| || ||||| |||||||||| ||    ||  |||||||||||  |||| ||||||||||| |||||||    
T  248528 acttttttaaagaaataatttcttaattgag----aaaccttaaagagtgcccttaagacactcgttaacaagacc 248599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 335 - 451
Target Start/End: Complemental strand, 14116590 - 14116478
Alignment:
Q  335 tggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttagataaaattcttaaagagtgttcttagga 434  Q
    |||||||||||||||| |||  ||| ||||||  || |||||||||||| |||||||||||||||||||     ||||| ||||||||||   |||||||    
T  14116590 tggaaatttgtgcatttaatttatcgaaaattagagcattagacttttttaataaatagtttcttaatt----gaaaatccttaaagagtaaccttagga 14116495  T
Q  435 cactcgttagcaagacc 451  Q
    || ||||||||||||||    
T  14116494 cattcgttagcaagacc 14116478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 307 - 452
Target Start/End: Complemental strand, 42877353 - 42877212
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttag 406  Q
    ||||| ||||||| || ||||||| ||||||||| ||||| |||||||||||  ||||||||| | ||| |||||||  || |||| ||||| ||||  |    
T  42877353 tttaaagactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaaattttaaacttttttcatgaataatttctcaatt--g 42877256  T
Q  407 ataaaattcttaaagagtgttcttaggacactcgttagcaagacct 452  Q
    | ||| |  ||||||||||| ||||| |||||||||||||||||||    
T  42877255 agaaact--ttaaagagtgtccttagaacactcgttagcaagacct 42877212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 451
Target Start/End: Original strand, 30327584 - 30327627
Alignment:
Q  408 taaaattcttaaagagtgttcttaggacactcgttagcaagacc 451  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  30327584 taaaattcttaaagagtgtcctaaggacactcgttagcaagacc 30327627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 15206517 - 15206585
Alignment:
Q  332 ttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaa 401  Q
    ||||| |||||||||||||||||  ||| |||||||||||||| |||||||| ||| || ||||||||||    
T  15206517 ttatgaaaatttgtgcattcaatgaatcgaaaattgaagtattggacttttt-aatgaaaagtttcttaa 15206585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 43390370 - 43390425
Alignment:
Q  348 attcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    |||||||||||  |||||| |||||||||||||||  ||| |||||||||||||||    
T  43390370 attcaatacattgaaaattaaagtattagacttttctaatgaatagtttcttaatt 43390425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 383
Target Start/End: Complemental strand, 18988892 - 18988786
Alignment:
Q  277 gaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattag 376  Q
    |||||| |||| |||| | ||||| || | ||||| ||| |||||| ||||||| ||||| ||| || |||||||||| |||   ||||| |||||||||    
T  18988892 gaaatgataacgagtgccctaagggtactttttaaggacattagatagtaaatttttatgaaaacttatgcattcaatgcattggaaatttaagtattag 18988793  T
Q  377 acttttt 383  Q
    |||||||    
T  18988792 acttttt 18988786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 383
Target Start/End: Original strand, 20125639 - 20125727
Alignment:
Q  294 cttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagacttttt 383  Q
    |||||||| ||| ||||| ||||||| || ||||||| ||||| ||| ||||||||| | | |||| ||||||||||| ||| |||||||    
T  20125639 cttaagga-attttttaaggactttaaatagtaaatttttatgaaaaattgtgcatttagtgcatcgaaaattgaagtgttaaacttttt 20125727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 20721277 - 20721337
Alignment:
Q  332 ttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaata 392  Q
    |||||||||| ||||||||||||||||  ||||||||| | ||  ||||||| ||||||||    
T  20721277 ttatggaaatatgtgcattcaatacattgaaaattgaaatgtttaactttttaaataaata 20721337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 42308060 - 42308116
Alignment:
Q  338 aaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagt 394  Q
    ||||||||||||||||  ||||| ||||| |||||||| || |||||||| ||||||    
T  42308060 aaatttgtgcattcaacgcatcagaaattaaagtattatacattttcaatgaatagt 42308116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 407
Target Start/End: Complemental strand, 46896035 - 46895941
Alignment:
Q  313 gactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttaga 407  Q
    |||||||||| |||| || |||| ||||||| |||||||||| ||||  |||||||| |||||||||||||||||||||| ||||||||||||||    
T  46896035 gactttagatagtaagtttttatagaaatttatgcattcaatgcatcggaaattgaaatattagactttttcaataaataatttcttaatttaga 46895941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 450
Target Start/End: Original strand, 44584056 - 44584185
Alignment:
Q  316 tttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttagataaaattc 415  Q
    ||||||| |||| || ||||| ||| ||||||||| |||||||  |||||||||  ||||||||||||||| |||||||||||||||||||||    | |    
T  44584056 tttagatagtaagtttttatgaaaacttgtgcatttaatacattgaaaattgaaacattagactttttcaacaaatagtttcttaatttagat----tcc 44584151  T
Q  416 ttaaagagtgttcttaggacactcgttagcaagac 450  Q
    |||||||||||  ||| | ||||||||||||||||    
T  44584152 ttaaagagtgtcattatg-cactcgttagcaagac 44584185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 9500923 - 9500970
Alignment:
Q  361 aaaattgaagtattagactttttcaataaatagtttcttaatttagat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9500923 aaaattgaagtattagactttttcaataaatagtttcttaatttagat 9500970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 403
Target Start/End: Complemental strand, 44920358 - 44920231
Alignment:
Q  276 agaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtatta 375  Q
    |||||||||||| |||| | |||||  | | ||||| ||||| | || ||||||| ||||||||| ||||||||||||| ||||| |||||||||| |||    
T  44920358 agaaatgttaacgagtgccctaagggcactttttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatgcatcataaattgaagtgtta 44920259  T
Q  376 gactttttcaataaatagtttcttaatt 403  Q
     ||||||| ||| |||| ||||||||||    
T  44920258 aacttttttaatgaataatttcttaatt 44920231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 277 - 451
Target Start/End: Complemental strand, 14758698 - 14758528
Alignment:
Q  277 gaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattag 376  Q
    ||||||||||| ||||   |||||| | | ||||| ||||||| || ||||||| ||||| ||| ||||||||||||| |||| ||||||||| | |||     
T  14758698 gaaatgttaacgagtgctctaaggacactctttaaggactttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 14758599  T
Q  377 actttttcaataaatagtttcttaatttagataaaattcttaaagagtgttcttaggacactcgttagcaagacc 451  Q
    ||||||| ||  |||| ||||||||||  |  ||| |  ||||||||||  |||||||||||||||| |||||||    
T  14758598 acttttttaaggaataatttcttaatt--ggaaaact--ttaaagagtgcccttaggacactcgttaacaagacc 14758528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 403
Target Start/End: Complemental strand, 18039002 - 18038906
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||| ||||||||||  ||| || ||||| ||||||||| ||||||| ||||  ||||||||| |||||| |||||||||  || |||||||||||    
T  18039002 tttaaagactttagataataattttttatgaaaatttgtgtattcaatgcatcggaaattgaagcattagattttttcaatgcattgtttcttaatt 18038906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 403
Target Start/End: Complemental strand, 18032273 - 18032202
Alignment:
Q  332 ttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||||||| || |||||| ||| ||||  ||||||||| |||| |||||||||||||||| ||||||||||    
T  18032273 ttatggaaacttatgcatttaatgcatcggaaattgaagcattaaactttttcaataaataatttcttaatt 18032202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 451
Target Start/End: Original strand, 19547046 - 19547186
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttag 406  Q
    ||||| ||||||| || |||| || |||| |||| ||||||||||||| ||||   |||||||||||| ||| |||||||| |||| ||||||| ||  |    
T  19547046 tttaaggactttatatagtaagtttttatagaaacttgtgcattcaatgcatcgggaattgaagtattggacattttcaatgaataatttcttacttggg 19547145  T
Q  407 ataaaattcttaaagagtgttcttaggacactcgttagcaagacc 451  Q
        ||| |||||||| ||  |||||| |||||||||||||||||    
T  19547146 ----aatccttaaagaatgcccttagggcactcgttagcaagacc 19547186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 447
Target Start/End: Original strand, 26533730 - 26533849
Alignment:
Q  324 gtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttagataaaattcttaaagag 423  Q
    ||||||| ||||||||| ||||||||| || ||| |  ||||||||   |||||||||||||||  ||| |||||||||| ||    ||| |||||| ||    
T  26533730 gtaaatttttatggaaacttgtgcatttaaaacagcggaaattgaaacgttagactttttcaattgataatttcttaattgag----aatccttaaaaag 26533825  T
Q  424 tgttcttaggacactcgttagcaa 447  Q
    |||| ||| |||||||||||||||    
T  26533826 tgttattatgacactcgttagcaa 26533849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 26766063 - 26765974
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagttt 396  Q
    ||||| |||||||||| |||| ||  |||  ||| || |||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||    
T  26766063 tttaaggactttagatagtaagtttatataaaaacttatgcattcaatccatcagaaattgaaatattaaactttttcaatgaatagttt 26765974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 38294009 - 38293977
Alignment:
Q  419 aagagtgttcttaggacactcgttagcaagacc 451  Q
    ||||||||||||||||||||||||| |||||||    
T  38294009 aagagtgttcttaggacactcgttatcaagacc 38293977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 451
Target Start/End: Complemental strand, 45925497 - 45925461
Alignment:
Q  415 cttaaagagtgttcttaggacactcgttagcaagacc 451  Q
    |||||||||||| |||||||||||||||| |||||||    
T  45925497 cttaaagagtgtccttaggacactcgttaacaagacc 45925461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 46729281 - 46729229
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatc 359  Q
    ||||| ||||||| || ||||||| ||||||||| ||||||||||||| ||||    
T  46729281 tttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatgcatc 46729229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 403
Target Start/End: Complemental strand, 13603 - 13478
Alignment:
Q  278 aaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattaga 377  Q
    ||||| |||| |||| |||||||  | | ||||| ||||| |||| |||  || ||||||||| ||||||||||||  ||||  ||||||||||||||||    
T  13603 aaatgctaacgagtgccttaagggcactctttaaagacttgagatagtaggtttttatggaaacttgtgcattcaaagcatcggaaattgaagtattaga 13504  T
Q  378 ctttttcaataaatagtttcttaatt 403  Q
    |||||||||| |||||||||||||||    
T  13503 ctttttcaatgaatagtttcttaatt 13478  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 451
Target Start/End: Original strand, 44319848 - 44319992
Alignment:
Q  303 attatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaat 402  Q
    ||||||||| ||||||| ||  |||||| |||||| || ||||||||| ||| |||| |||||| |||| ||| ||||||| || ||||| |||||||||    
T  44319848 attatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaactttttaaaaaaataatttcttaat 44319947  T
Q  403 ttagataaaattcttaaagagtgttcttaggacactcgttagcaagacc 451  Q
    | | |||     |||||||||||| |||||||||||||||| |||||||    
T  44319948 tgaaatac----cttaaagagtgtccttaggacactcgttaacaagacc 44319992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 3298320 - 3298231
Alignment:
Q  314 actttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    |||||||||  |||||| ||||||||| ||  ||||||||| ||||| |||||||| ||| |  |||||||||| |||||||||||||||    
T  3298320 actttagatgttaaatttttatggaaacttaagcattcaatgcatcagaaattgaaatatgaagctttttcaatgaatagtttcttaatt 3298231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 4507909 - 4507957
Alignment:
Q  348 attcaatacatcaaaaattgaagtattagactttttcaataaatagttt 396  Q
    ||||||| |||||||||||||||||||| |||||| || ||||||||||    
T  4507909 attcaatgcatcaaaaattgaagtattaaacttttacagtaaatagttt 4507957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 403
Target Start/End: Original strand, 5495992 - 5496063
Alignment:
Q  332 ttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||||||| ||||||||||||| |||| |||||| |||| ||| || |||||||  |||| ||||||||||    
T  5495992 ttatggaaagttgtgcattcaatgcatcgaaaattaaagtgttaaacattttcaaggaataatttcttaatt 5496063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 403
Target Start/End: Complemental strand, 41898362 - 41898267
Alignment:
Q  308 ttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||| ||| |||||  |||||| ||||||||| |||| |||| ||| ||||  |||||||| ||||  ||||||||||| || ||||||||||||    
T  41898362 ttaataactgtagataataaattgttatggaaacttgtacatttaatgcatcggaaattgaattattgaactttttcaatgaaaagtttcttaatt 41898267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 6771946 - 6771884
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaa 369  Q
    ||||| ||||||| || ||||||| ||||||||| |||||||||||||| |||  ||||||||    
T  6771946 tttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatatatcggaaattgaa 6771884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 24557789 - 24557747
Alignment:
Q  361 aaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||    
T  24557789 aaaattgaagtattagacttttttaataaataattttttaatt 24557747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 27156922 - 27156877
Alignment:
Q  338 aaatttgtgcattcaatacatcaaaaattgaagtattagacttttt 383  Q
    |||||||||||||  |||||||||||||||||  ||||||||||||    
T  27156922 aaatttgtgcatttgatacatcaaaaattgaatcattagacttttt 27156877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 43211011 - 43211093
Alignment:
Q  363 aattgaagtattagactttttcaataaatagtttcttaatttagataaaattcttaaagagtgttcttaggacactcgttagcaaga 449  Q
    |||| |||||||| |||||||  ||||||||||| ||||||     |||| ||||||||||||  |||||||||||||||| |||||    
T  43211011 aattaaagtattaaactttttagataaatagttttttaatt----gaaaaatcttaaagagtgcccttaggacactcgttaacaaga 43211093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 403
Target Start/End: Original strand, 11580418 - 11580514
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||| |||||||||| |||| || |||||||||  |||| ||||||| ||||||||||||||||||||||||| || ||| |||| ||| ||||||    
T  11580418 tttaaagactttagatagtaagtttttatggaaacatgtgtattcaatccatcaaaaattgaagtattagacttatttaatgaataattttttaatt 11580514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 277 - 403
Target Start/End: Original strand, 32770737 - 32770863
Alignment:
Q  277 gaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattag 376  Q
    ||||||||||  ||||  ||||| | ||| ||||| |||||||||| ||||| | |||||||||||| |||  ||||| |||   ||||||||||||||     
T  32770737 gaaatgttaatgagtgcgttaagaacattctttaaggactttagatagtaaaattttatggaaatttatgcggtcaatgcattcgaaattgaagtattaa 32770836  T
Q  377 actttttcaataaatagtttcttaatt 403  Q
      |||||||||||||| ||||||||||    
T  32770837 gttttttcaataaataatttcttaatt 32770863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 11252723 - 11252781
Alignment:
Q  345 tgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||||||||  ||| |||||||||||| |||||||||||||| || ||||||||||||    
T  11252723 tgcattcaatgtatcgaaaattgaagtagtagactttttcaattaaaagtttcttaatt 11252781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 451
Target Start/End: Complemental strand, 27922029 - 27921859
Alignment:
Q  278 aaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattaga 377  Q
    ||||| |||| |||||| |||| || || |||||  | |||||||  ||| || ||| |||||||| | |||||||| |||  ||||||||| |||||||    
T  27922029 aaatgctaacaagtgtcctaagaatgttctttaagaaatttagataataagtttttaaggaaatttatacattcaatgcatttaaaattgaaatattaga 27921930  T
Q  378 c-tttttcaataaatagtttcttaatttagataaaattcttaaagagtgttcttaggacactcgttagcaagacc 451  Q
      ||||| |||||||| |||||||||||||    ||| |||||||||||| || || | ||| ||||||||||||    
T  27921929 ggttttttaataaataatttcttaatttag----aatacttaaagagtgtcctgagtatacttgttagcaagacc 27921859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 403
Target Start/End: Original strand, 33962940 - 33963036
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||| ||||||| ||  |||||| ||||| ||| ||||||||||||| |||  ||||||||||| ||| ||||||| ||  |||| ||||||||||    
T  33962940 tttaaggactttaaataataaatttttatgaaaaattgtgcattcaatgcattgaaaattgaagtgttaaacttttttaaagaataatttcttaatt 33963036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 401
Target Start/End: Complemental strand, 36260530 - 36260442
Alignment:
Q  313 gactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaa 401  Q
    |||||| ||| |||||||  |||  ||||||||| ||| ||| ||||| ||||||||| |||||||||||||||| ||||  |||||||    
T  36260530 gactttggatagtaaatttatataaaaatttgtgtatttaatgcatcagaaattgaagcattagactttttcaattaataacttcttaa 36260442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 447
Target Start/End: Original strand, 49011880 - 49012016
Alignment:
Q  307 tttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttag 406  Q
    ||||| ||||||| || |||| || || || ||| ||||||||| ||| |||| ||||||||||||||| ||||||| ||| ||||| ||||| |||       
T  49011880 tttaaggactttaaatagtaagtttttgtgaaaacttgtgcatttaatgcatcgaaaattgaagtattaaacttttttaatgaatagattcttgatt--- 49011976  T
Q  407 ataaaattcttaaagagtgttcttaggacactcgttagcaa 447  Q
      ||||| |||||||||||  |||||| |||||||||||||    
T  49011977 -aaaaatccttaaagagtgcacttaggtcactcgttagcaa 49012016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 7388877 - 7388788
Alignment:
Q  314 actttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatt 403  Q
    ||||||||| ||||||| ||||||||| ||||||||| ||| ||||  |||||| |  ||||||||||||||||  ||| ||||||||||    
T  7388877 actttagatagtaaatttttatggaaacttgtgcatttaatgcatcggaaattggaacattagactttttcaatggatattttcttaatt 7388788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 452
Target Start/End: Complemental strand, 43809223 - 43809118
Alignment:
Q  342 ttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttagataaaattcttaaagagtgttcttaggacactcgt 441  Q
    |||||||||||||  ||||||||| ||||  ||| | |||| ||||  ||| ||||||||||||||    ||||||||||||||| ||||||||||||||    
T  43809223 ttgtgcattcaatgtatcaaaaatcgaagctttaaaatttt-caatgcataatttcttaatttaga----attcttaaagagtgtccttaggacactcgt 43809129  T
Q  442 tagcaagacct 452  Q
    |||||| ||||    
T  43809128 tagcaaaacct 43809118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 452
Target Start/End: Complemental strand, 19652733 - 19652601
Alignment:
Q  316 tttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttagataaaattc 415  Q
    ||||||| |||| || ||||| ||||||||||||||||| |||   ||||| || ||||| || |||||||| |||| | |||||||||||    ||  |    
T  19652733 tttagatagtaagtttttatgaaaatttgtgcattcaatgcattggaaattaaactattatacattttcaatgaataatatcttaatttag----aaacc 19652638  T
Q  416 ttaaagagtgttcttaggacactcgttagcaagacct 452  Q
    |||||||||| |||||||| ||| |||| ||||||||    
T  19652637 ttaaagagtgctcttaggatacttgttaacaagacct 19652601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 403
Target Start/End: Original strand, 38949026 - 38949152
Alignment:
Q  277 gaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattag 376  Q
    ||||||||||| ||||| ||||||  | | ||||| ||||| | || ||||||| ||||| ||| ||||||||||||| ||||  |||||||||| |||     
T  38949026 gaaatgttaacgagtgttttaagggcactctttaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgcatcggaaattgaagtgttaa 38949125  T
Q  377 actttttcaataaatagtttcttaatt 403  Q
    | ||||| || ||||| ||| ||||||    
T  38949126 atttttttaagaaataattttttaatt 38949152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 403
Target Start/End: Complemental strand, 46506467 - 46506338
Alignment:
Q  276 agaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtatta 375  Q
    |||||||||||| |||||| ||| || | | || ||  ||||||||| ||||  | || ||||||||| | |||| ||| ||||  ||||||||||||||    
T  46506467 agaaatgttaacgagtgtcataaagacactcttgaagaactttagatagtaagcttttgtggaaatttatccatttaatgcatcggaaattgaagtatta 46506368  T
Q  376 gacttttt--caataaatagtttcttaatt 403  Q
    || |||||  ||||||||||||||||||||    
T  46506367 gattttttttcaataaatagtttcttaatt 46506338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 40781432 - 40781492
Alignment:
Q  332 ttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaata 392  Q
    |||||||||| | |||||||||| ||||| ||||| ||| |||| ||||||||||||||||    
T  40781432 ttatggaaatctatgcattcaatgcatcagaaattaaagcattaaactttttcaataaata 40781492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 446
Target Start/End: Complemental strand, 38682759 - 38682631
Alignment:
Q  314 actttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagtttcttaatttagataaaat 413  Q
    |||||||||  |||||| ||||  ||||||| | |||  || ||||| |||||||||||||| || |||| ||| |||| ||||||||||     |||||    
T  38682759 actttagatattaaatttttataaaaatttgcgtatttgatgcatcagaaattgaagtattacacatttttaatgaatattttcttaatt----aaaaat 38682664  T
Q  414 tcttaaagagtgttcttaggacactcgttagca 446  Q
    ||||||||| | | |||| ||||||||||||||    
T  38682663 tcttaaagaatatccttaagacactcgttagca 38682631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 452
Target Start/End: Complemental strand, 49360053 - 49360012
Alignment:
Q  411 aattcttaaagagtgttcttaggacactcgttagcaagacct 452  Q
    |||||||||| |||||||||||| ||||||||| ||||||||    
T  49360053 aattcttaaaaagtgttcttagggcactcgttaacaagacct 49360012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 451
Target Start/End: Original strand, 14452233 - 14452269
Alignment:
Q  415 cttaaagagtgttcttaggacactcgttagcaagacc 451  Q
    |||||||||||| |||| |||||||||||||||||||    
T  14452233 cttaaagagtgtccttaagacactcgttagcaagacc 14452269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 25582 - 25644
Alignment:
Q  334 atggaaatttgtgcattcaatacatcaaaaattgaagtattagactttttcaataaatagttt 396  Q
    |||||||||||| |||||| | |||| ||||||||| ||||||||| ||||||||||||||||    
T  25582 atggaaatttgtacattcactgcatcgaaaattgaaatattagactctttcaataaatagttt 25644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 403
Target Start/End: Original strand, 122432 - 122558
Alignment:
Q  277 gaaatgttaactagtgtcttaaggatattatttaatgactttagatcgtaaattcttatggaaatttgtgcattcaatacatcaaaaattgaagtattag 376  Q
    ||||||||||| |||| ||| |||  ||| ||||| || ||||  | |||| || ||||||||| ||||||||| ||| ||||  ||||| |||| |||     
T  122432 gaaatgttaacgagtgcctttagggcattctttaaggattttaagtagtaattttttatggaaaattgtgcatttaatgcatcggaaattaaagtgttaa 122531  T
Q  377 actttttcaataaatagtttcttaatt 403  Q
    ||||||||||  |||| ||||||||||    
T  122532 actttttcaaagaataatttcttaatt 122558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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