View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_low_20 (Length: 239)
Name: NF8552_low_20
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42257600 - 42257378
Alignment:
| Q |
1 |
ttttccatcttacaaaatgcaggaattttgtgttaagaaaaaagatcgtgttgaaacagttaccatgcttggtgtttatggattcctagttactgctatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42257600 |
ttttccatcttacaaaatgcaggaattttgtgttaagaaaaaagatcgtgttgaaacagttaccatgcttggtgtttatggattcctagttactgctatt |
42257501 |
T |
|
| Q |
101 |
gaagtgtatccttcttagtgttgtttgttacttggctattgcctgttaccaaatactattattctaatttaacttgcttttctgttttataattttgatt |
200 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42257500 |
gaagtgtatcctacttagtgttttttgttacttggctattgcctgttaccaaatactattattctaatttaacttgcttttctgttttataattttgatt |
42257401 |
T |
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| Q |
201 |
ggttccttcctatactttattat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42257400 |
ggttccttcctatactttattat |
42257378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 42263136 - 42263022
Alignment:
| Q |
1 |
ttttccatcttacaaaatgcaggaattttgtgttaagaaaaaagatcgtgttgaaacagttaccatgcttggtgtttatggattcctagttactgctatt |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42263136 |
ttttccatcttataaaatgcaggaattttgtgttaagaaaaaagatcgtgttgaagcagttaccatgcttggtgtttatggattcctagttactgctatt |
42263037 |
T |
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| Q |
101 |
gaagtgtatccttct |
115 |
Q |
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||||||||||||||| |
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| T |
42263036 |
gaagtgtatccttct |
42263022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 42262878 - 42262817
Alignment:
| Q |
146 |
ttaccaaatactattattctaatttaacttgcttttctgttttataattttgattggttcctt |
208 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
42262878 |
ttaccaaatactattattctaatttaactt-agtttctgttctataattttgattggttcctt |
42262817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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