View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_low_21 (Length: 224)
Name: NF8552_low_21
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 15684834 - 15684648
Alignment:
| Q |
15 |
atgaagagaattgtgcagcagtggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatattgtcaaactattgtgtgttgtctta |
114 |
Q |
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| T |
15684834 |
atgaagagaattgtgcagcagtggagaataattagcttgacaaagtctcttgaacctcaaattattttatgatattgtcaaactattgtgtgttgtctta |
15684735 |
T |
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| Q |
115 |
tttgtgtttattatgctttctttcattttggtactttactctaatgattatacaagtttattaaacttgtttgtatttccttaattccttta |
206 |
Q |
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| T |
15684734 |
tttgtgtttattatgctttccttcattttgg-----tactctaatgattatacaagtttattaaacttgtatgtatttccttgattccttta |
15684648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 15620000 - 15619810
Alignment:
| Q |
17 |
gaagagaattgtgcagcagtggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatattgtcaaactattgtgtgttgtcttatt |
116 |
Q |
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| T |
15620000 |
gaagagaattaagcagcggtgaagaataattaggttgacaaagtctcttgaacttcaaattattttatgatattgtcaaactattgtgtgtcgttttttt |
15619901 |
T |
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| Q |
117 |
tgtgttt-attatgctttctttcattttggtactttactctaatgattatacaagtttattaaacttgtttgtatttccttaattccttta |
206 |
Q |
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| T |
15619900 |
tttgttttattatactttccttcattttggtactttactataatgattatacaagtttattaaacttgtatgtatttccttaatcccttta |
15619810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 19017289 - 19017360
Alignment:
| Q |
36 |
tggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatattgtcaaactattgtgtgt |
107 |
Q |
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| T |
19017289 |
tggagaataattagcttgacaaaagctcttgaacctcaaactatttcatgatgttttcaaactattgtgtgt |
19017360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 17273987 - 17273933
Alignment:
| Q |
36 |
tggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatatt |
90 |
Q |
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| T |
17273987 |
tggagaataattagcttgacaaaatctttcaaaccttaatctattttatgatatt |
17273933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 17290150 - 17290096
Alignment:
| Q |
36 |
tggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatatt |
90 |
Q |
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| T |
17290150 |
tggagaataattagcttgacaaaatctttcaaaccttaatctattttatgatatt |
17290096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 18652447 - 18652393
Alignment:
| Q |
36 |
tggagaataattagcttgacaaaatctcttgaacctcaaattattttatgatatt |
90 |
Q |
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| T |
18652447 |
tggagaataattagctttacaaaagcttttgaaccttaatctattttatgatatt |
18652393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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