View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8552_low_3 (Length: 494)

Name: NF8552_low_3
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8552_low_3
NF8552_low_3
[»] chr2 (3 HSPs)
chr2 (120-477)||(33138362-33138719)
chr2 (17-57)||(33138259-33138299)
chr2 (381-419)||(18558754-18558792)
[»] chr3 (6 HSPs)
chr3 (120-429)||(23331908-23332211)
chr3 (120-477)||(19246719-19247070)
chr3 (120-477)||(17664312-17664667)
chr3 (120-240)||(899427-899547)
chr3 (370-472)||(899746-899848)
chr3 (193-235)||(53924118-53924160)
[»] chr1 (31 HSPs)
chr1 (124-240)||(34309702-34309818)
chr1 (370-457)||(34309437-34309524)
chr1 (388-472)||(35212039-35212123)
chr1 (370-439)||(35190469-35190538)
chr1 (371-439)||(35270542-35270610)
chr1 (370-472)||(35295849-35295951)
chr1 (370-439)||(35276640-35276709)
chr1 (377-437)||(35205017-35205077)
chr1 (372-472)||(35224986-35225086)
chr1 (370-472)||(45525540-45525639)
chr1 (164-234)||(45525799-45525869)
chr1 (370-472)||(45531638-45531740)
chr1 (370-423)||(35147477-35147530)
chr1 (370-423)||(35263133-35263186)
chr1 (388-472)||(35194566-35194650)
chr1 (192-240)||(35476643-35476691)
chr1 (164-240)||(45531903-45531979)
chr1 (390-461)||(8638985-8639056)
chr1 (163-253)||(35225226-35225316)
chr1 (171-240)||(35147654-35147723)
chr1 (167-240)||(35190668-35190741)
chr1 (164-253)||(35205237-35205326)
chr1 (163-240)||(35295648-35295725)
chr1 (380-437)||(35476410-35476467)
chr1 (194-240)||(35200237-35200283)
chr1 (370-443)||(35189413-35189486)
chr1 (370-439)||(35200038-35200107)
chr1 (164-253)||(35212279-35212368)
chr1 (370-437)||(35248378-35248445)
chr1 (193-240)||(35248593-35248640)
chr1 (389-439)||(35208239-35208289)
[»] chr7 (2 HSPs)
chr7 (158-240)||(38634919-38635001)
chr7 (369-472)||(38631957-38632060)


Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 120 - 477
Target Start/End: Original strand, 33138362 - 33138719
Alignment:
Q  120 acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggc 219  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33138362 acaggtttcctgaagttgctaagctttctcttttgtactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggc 33138461  T
Q  220 ttatctcgtgttcaagatgatctatgcctatggacaaaagaacaaacccgtgtgctttaatgttggtgttgatggtgaccgtagaagcgttaaatccgtt 319  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33138462 ttatctcgtgttcaagatgatccatgcctatggacaaaagaacaaacccgtgtgctttaatgttggtgttgatggtgaccgtagaagcgttaaatccgtt 33138561  T
Q  320 tgtttggatccagacttggaacattggcggaagtggcactgcaatgaagaaggattgcagcgtcctactgtgagaagtgatgggtggttggagattgaga 419  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33138562 tgtttggatccagacttggaacattggcggaagtcgcactacaatgaagaaggattgcagcgtcctactgtgagaagtgatgggtggttggagattgaga 33138661  T
Q  420 tgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagtgttctcca 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33138662 tgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagtgttctcca 33138719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 33138259 - 33138299
Alignment:
Q  17 catcatataatcagttaggcttgaaataatttagttatcca 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33138259 catcatataatcagttaggcttgaaataatttagttatcca 33138299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 419
Target Start/End: Original strand, 18558754 - 18558792
Alignment:
Q  381 gtcctactgtgagaagtgatgggtggttggagattgaga 419  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  18558754 gtcctagtgtgagacgtgatgggtggttggagattgaga 18558792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 120 - 429
Target Start/End: Complemental strand, 23332211 - 23331908
Alignment:
Q  120 acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggc 219  Q
    ||||||| ||||||||||||||||||  |||||| | ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| || ||    
T  23332211 acaggttccctgaagttgctaagcttcgtcttttgttctcgcatgaaatttgtgggattattaacactctttcattgtccccaaatactcagtatgcagc 23332112  T
Q  220 ttatctcgtgttcaagatgatctatgcctatggacaaaagaacaaacccgtgtgctttaatgttggtgttgatggtgaccgtagaagcgttaaatccgtt 319  Q
    ||| |||||||| ||||| || |||||| ||||| |   |||| |||| ||| |||||  || |||||| ||||||| || | ||||| |||||||||||    
T  23332111 ttacctcgtgtttaagataatttatgcccatggatatgtgaacgaacctgtgagcttttttgatggtgtcgatggtggccatcgaagcattaaatccgtt 23332012  T
Q  320 tgtttggatccagacttggaacattggcggaagtggcactgcaatgaagaaggattgcagcgtcctactgtgagaagtgatgggtggttggagattgaga 419  Q
    |||||||||||| || || |||||      ||   | ||  ||| ||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  23332011 tgtttggatccaaacatgaaacat------aatccgtacaacaaagaagaagaattgcatcgtcctaatgtgagaagcgatgggtggttggagattgaga 23331918  T
Q  420 tgggaaaatt 429  Q
    ||||| ||||    
T  23331917 tgggagaatt 23331908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 120 - 477
Target Start/End: Original strand, 19246719 - 19247070
Alignment:
Q  120 acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggc 219  Q
    ||||||| || ||||||||||||||   |||| | | |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| || ||    
T  19246719 acaggttcccggaagttgctaagctcagtcttgtgttctcgcatgaaattcgtggtattattaagactctttccttgtccccaaatactcagtatgcagc 19246818  T
Q  220 ttatctcgtgttcaagatgatctatgcctatggacaaaagaacaaacccgtgtgctttaatgttggtgttgatggtgaccgtagaagcgttaaatccgtt 319  Q
    ||||||||| |||||||| ||  |||||| ||||   |||||| ||||||||  ||||  ||| |||||   ||||| |   |||||  ||||||| |||    
T  19246819 ttatctcgtcttcaagataattgatgcctgtggaagtaagaacgaacccgtgaacttttctgtcggtgtcagtggtggcaacagaagtattaaatctgtt 19246918  T
Q  320 tgtttggatccagacttggaacattggcggaagtggcactgcaatgaagaaggattgcagcgtcctactgtgagaagtgatgggtggttggagattgaga 419  Q
    |||||||||||| |||||||||||      | |  ||||  ||| |||| ||||||||| ||||||| ||| ||| ||||||| ||||||||||||||||    
T  19246919 tgtttggatccaaacttggaacat------aggacgcacaacaacgaagcaggattgcaacgtcctagtgttagatgtgatggatggttggagattgaga 19247012  T
Q  420 tgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagtgttctcca 477  Q
    ||||| ||||||| ||||||||||  |||||||||||| |||  ||||||||| ||||    
T  19247013 tgggagaattctttaattcaagcctcaaagatgaagaaatccacatgagtgttatcca 19247070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 120 - 477
Target Start/End: Original strand, 17664312 - 17664667
Alignment:
Q  120 acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaac----actctttccttgtccccaaatactcagtacg 215  Q
    ||||||| || ||||||||||||||   |||| | | |||||||||||||||||| | ||||||     |||||||| |||||||||||||||||||| |    
T  17664312 acaggttcccggaagttgctaagctcagtcttgtgttctcgcatgaaattcgtggtattattaattaagactctttcattgtccccaaatactcagtatg 17664411  T
Q  216 cggcttatctcgtgttcaagatgatctatgcctatggacaaaagaacaaacccgtgtgctttaatgttggtgttgatggtgaccgtagaagcgttaaatc 315  Q
    | ||||||||||| |||||||| ||  |||||  ||||   |||||| ||| ||||  ||||  ||| |||||   ||||| ||  |||||| |||||||    
T  17664412 cagcttatctcgtcttcaagataattgatgcccgtggaagtaagaacgaacgcgtgaacttttctgtcggtgtcagtggtggccacagaagcattaaatc 17664511  T
Q  316 cgtttgtttggatccagacttggaacattggcggaagtggcactgcaatgaagaaggattgcagcgtcctactgtgagaagtgatgggtggttggagatt 415  Q
     ||||||||||||||| ||||||||||| ||| |      |||  ||| |||| ||||||||| ||||||| ||| ||| ||||||| ||||||||||||    
T  17664512 tgtttgtttggatccaaacttggaacataggcag------cacaacaacgaagcaggattgcaacgtcctagtgttagatgtgatggatggttggagatt 17664605  T
Q  416 gagatgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagtgttctcca 477  Q
    ||||||||| ||||||| ||||||||||  ||||||||||||||||  ||||||||| ||||    
T  17664606 gagatgggagaattctttaattcaagcctcaaagatgaagaagtccacatgagtgttatcca 17664667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 899427 - 899547
Alignment:
Q  120 acaggtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggc 219  Q
    |||||||||||||||| | |||||||| |||| | | ||||| |||||||||||| |  ||||||||| |||||||||||| |||||||  ||| |||||    
T  899427 acaggtttcctgaagtcgttaagctttgtcttgtgttctcgcttgaaattcgtggaataattaacactttttccttgtcccaaaatacttggtatgcggc 899526  T
Q  220 ttatctcgtgttcaagatgat 240  Q
    |||||| ||||||||||||||    
T  899527 ttatcttgtgttcaagatgat 899547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 472
Target Start/End: Original strand, 899746 - 899848
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagt 469  Q
    |||||||||||| |||||  ||||||| ||||||||||||||||||||||||||| | || ||||||||||| | | |||  ||||||||||  ||||||    
T  899746 aggattgcagcgccctaccatgagaagcgatgggtggttggagattgagatgggagagttattcaattcaagacttgaaggagaagaagtccaaatgagt 899845  T
Q  470 gtt 472  Q
    |||    
T  899846 gtt 899848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 53924118 - 53924160
Alignment:
Q  193 cttgtccccaaatactcagtacgcggcttatctcgtgttcaag 235  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||    
T  53924118 cttgtccccaaatactcggtatgcggcttatcttgtgttcaag 53924160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 34309818 - 34309702
Alignment:
Q  124 gtttcctgaagttgctaagctttctcttttctactcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttat 223  Q
    ||||||||||||||||||||||| |||| | ||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  34309818 gtttcctgaagttgctaagctttgtcttgtgtactcgcttgaaattcgtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttat 34309719  T
Q  224 ctcgtgttcaagatgat 240  Q
    |||||||||||||||||    
T  34309718 ctcgtgttcaagatgat 34309702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 370 - 457
Target Start/End: Complemental strand, 34309524 - 34309437
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaa 457  Q
    ||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||| | |||||||||||    
T  34309524 aggattgcaacgtcctaatgtaagaagtgatggatggttggagattgagatgggagagttcttcaattcaagccttgaagatgaagaa 34309437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 388 - 472
Target Start/End: Complemental strand, 35212123 - 35212039
Alignment:
Q  388 tgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagtgtt 472  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| | ||||||||||| |||  |||||||||    
T  35212123 tgtgagaagtgatgggtggttggagattgagatgggagagttcttcaattctagccttgaagatgaagaaatccaaatgagtgtt 35212039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 35190538 - 35190469
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattca 439  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||    
T  35190538 aggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatcggagagttcttcaattca 35190469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 35270610 - 35270542
Alignment:
Q  371 ggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattca 439  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  35270610 ggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatgggggagttcttcaattca 35270542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 472
Target Start/End: Original strand, 35295849 - 35295951
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagt 469  Q
    ||||||||| |  |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||     ||||||||||||||  ||||||    
T  35295849 aggattgcaacagcctagtgtgagaagtgatgggtggttggagattgagatgggagagttcttcaattcaggcttagtagatgaagaagtccaaatgagt 35295948  T
Q  470 gtt 472  Q
    |||    
T  35295949 gtt 35295951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 35276709 - 35276640
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattca 439  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||  | ||||||||||||    
T  35276709 aggattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatgggggagttcttcaattca 35276640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 35205077 - 35205017
Alignment:
Q  377 cagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaatt 437  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||    
T  35205077 cagcgtcctaatgtgagaagtgatgggtggttggagattgagatgggagattttttcaatt 35205017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 472
Target Start/End: Complemental strand, 35225086 - 35224986
Alignment:
Q  372 gattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagtgt 471  Q
    ||||||| ||||||| ||||||||| ||||| ||||| ||||||||||||||| | ||||||| |||| |||   |||||||||||||||  ||||||||    
T  35225086 gattgcaacgtcctaatgtgagaagcgatggctggttagagattgagatgggagagttcttcatttcaggcctagaagatgaagaagtccaaatgagtgt 35224987  T
Q  472 t 472  Q
    |    
T  35224986 t 35224986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 472
Target Start/End: Complemental strand, 45525639 - 45525540
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagt 469  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||||| |    ||||||||| ||| | || ||||||||||||  ||||||    
T  45525639 aggattgccgcgtcctggtgtgagaagtgatgggtggttggagattgagatgggaga---gttcaattcaggccttgaaaatgaagaagtccagatgagt 45525543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 45525869 - 45525799
Alignment:
Q  164 gaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaa 234  Q
    |||||||||||||  ||||||| |||| ||||||| |||||||||||||| || |||||||||||||||||    
T  45525869 gaaattcgtgggatgattaacaatcttgccttgtctccaaatactcagtatgcagcttatctcgtgttcaa 45525799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 472
Target Start/End: Complemental strand, 45531740 - 45531638
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagt 469  Q
    |||||||| ||| |||| |  |||||||| | |||||| |||||||||||||||| | |||||||||||| ||| | || |||||||||||| |||||||    
T  45531740 aggattgccgcggcctagttggagaagtggtaggtggtgggagattgagatgggagagttcttcaattcaggccttgaaaatgaagaagtccatatgagt 45531641  T
Q  470 gtt 472  Q
    |||    
T  45531640 gtt 45531638  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 35147530 - 35147477
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatggg 423  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  35147530 aggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatggg 35147477  T

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Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 35263186 - 35263133
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatggg 423  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  35263186 aggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatggg 35263133  T

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Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 472
Target Start/End: Complemental strand, 35194650 - 35194566
Alignment:
Q  388 tgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgagtgtt 472  Q
    ||||||||| |||||||||||||||||||| |||||  | ||||||||| |||||| | ||||||||||||| |  |||||||||    
T  35194650 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttcaatccaagccttgaagatgaagaagtgcaaatgagtgtt 35194566  T

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Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 35476691 - 35476643
Alignment:
Q  192 ccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 240  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  35476691 ccttgtccccaaatactcagtatgcggcttatcttgtgttcaagatgat 35476643  T

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Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 45531979 - 45531903
Alignment:
Q  164 gaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 240  Q
    |||||||||||||  ||||||| |||| ||||||||||||||||||| || || |||||||| |||||||| |||||    
T  45531979 gaaattcgtgggatgattaacaatcttgccttgtccccaaatactcaatatgcagcttatcttgtgttcaaaatgat 45531903  T

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Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 461
Target Start/End: Complemental strand, 8639056 - 8638985
Alignment:
Q  390 tgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaagtcc 461  Q
    |||||||||||||||||||||||| |||||||||| | |||||||||||| ||    |||||||||||||||    
T  8639056 tgagaagtgatgggtggttggagactgagatgggagagttcttcaattcaggcttagaagatgaagaagtcc 8638985  T

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Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 35225316 - 35225226
Alignment:
Q  163 tgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgatctatgcctatgga 253  Q
    ||||||||||||||   | ||||| ||| |||||||||||||||||| ||| |   ||||||| ||||||||||||||| |||||||||||    
T  35225316 tgaaattcgtgggaagttaaacacccttgccttgtccccaaatactcggtatgtaacttatcttgtgttcaagatgatcaatgcctatgga 35225226  T

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Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 35147723 - 35147654
Alignment:
Q  171 gtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 240  Q
    ||||||| || ||||| |||  ||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  35147723 gtgggacgataaacacccttagcttgtccccaaatacccagtatgcggcttatcttgtgttcaagatgat 35147654  T

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Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 35190741 - 35190668
Alignment:
Q  167 attcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 240  Q
    ||||||||||  || || || ||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  35190741 attcgtgggatgataaatacccttgccttgtccccaaatacccagtatgcggcttatcttgtgttcaagatgat 35190668  T

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Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 35205326 - 35205237
Alignment:
Q  164 gaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgatctatgcctatgga 253  Q
    |||||||||||||  ||||||| |||| | ||||| ||||||||||| || || |||||||| ||||||||||||||  ||||| |||||    
T  35205326 gaaattcgtgggatgattaacaatcttgcattgtctccaaatactcaatatgcagcttatcttgtgttcaagatgattgatgccgatgga 35205237  T

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Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 35295648 - 35295725
Alignment:
Q  163 tgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 240  Q
    ||||||||||||||  || ||||| | | ||||||||||||||||||| || || |||||||| ||||||||||||||    
T  35295648 tgaaattcgtgggatgataaacacccctgccttgtccccaaatactcaatatgcagcttatcttgtgttcaagatgat 35295725  T

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Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 35476467 - 35476410
Alignment:
Q  380 cgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaatt 437  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| | ||||| ||||    
T  35476467 cgtcctagtgtgagacgtgatgggtggttggagattgagatgggagagttctttaatt 35476410  T

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Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 35200283 - 35200237
Alignment:
Q  194 ttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 240  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||    
T  35200283 ttgtccccaaatactcagtatgcagcttatcttgtgttcaagatgat 35200237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 35189486 - 35189413
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagcc 443  Q
    |||||||||  |||||  ||||||||||||| |||||||||||||||  |||||  | ||||||||||||||||    
T  35189486 aggattgcaatgtccttgtgtgagaagtgataggtggttggagattggaatgggggagttcttcaattcaagcc 35189413  T

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Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 35200107 - 35200038
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattca 439  Q
    ||||||||| || |||| ||||||||| |||||||||||||||||||| || ||  | ||||||||||||    
T  35200107 aggattgcaacgccctagtgtgagaagcgatgggtggttggagattgaaatcggggagttcttcaattca 35200038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 35212368 - 35212279
Alignment:
Q  164 gaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgatctatgcctatgga 253  Q
    ||||||||||||   ||||||  |||| ||||||| ||||||||||  || ||||||||||| ||||||||||||||  ||||| |||||    
T  35212368 gaaattcgtggggtgattaacgatcttgccttgtctccaaatactcgctatgcggcttatcttgtgttcaagatgattgatgcccatgga 35212279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 35248445 - 35248378
Alignment:
Q  370 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaatt 437  Q
    |||||||||  || ||| ||||||||| ||||||||||| ||||||||||||||  | ||||||||||    
T  35248445 aggattgcaaagttctattgtgagaagcgatgggtggtttgagattgagatgggggagttcttcaatt 35248378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 35248640 - 35248593
Alignment:
Q  193 cttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 240  Q
    ||||||||||||||||||||| || |||||||| ||||||||| ||||    
T  35248640 cttgtccccaaatactcagtatgcagcttatcttgtgttcaaggtgat 35248593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 35208289 - 35208239
Alignment:
Q  389 gtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattca 439  Q
    |||||||| ||||||||||||||||||||||| ||  | ||||||||||||    
T  35208289 gtgagaagcgatgggtggttggagattgagattggggagttcttcaattca 35208239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 38635001 - 38634919
Alignment:
Q  158 tcgcatgaaattcgtgggactattaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 240  Q
    |||| |||||||||||| |  || |||||||||| |||||||| |||||||||||| |  |||||||| |||||| |||||||    
T  38635001 tcgcttgaaattcgtggaagaataaacactctttacttgtcccgaaatactcagtatgtagcttatcttgtgttccagatgat 38634919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 472
Target Start/End: Complemental strand, 38632060 - 38631957
Alignment:
Q  369 aaggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatgggaaaattcttcaattcaagccctaaagatgaagaagtccgtatgag 468  Q
    |||||||||  ||| ||| ||| ||||  |||||||||||||||||| | |||||| | ||||||| ||||  || ||||||||||||| |||  |||||    
T  38632060 aaggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcatatgggagagttcttcacttcagaccttaaagatgaagaaatccagatgag 38631961  T
Q  469 tgtt 472  Q
    ||||    
T  38631960 tgtt 38631957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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