View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8552_low_5 (Length: 447)
Name: NF8552_low_5
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 8683688 - 8683251
Alignment:
| Q |
11 |
gaacctgtgaatgaatcaatgaacatataagataacaaatcaaagatttacataaaaatcgaaacaaaagacgttacagatactaacctgacagcatttc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8683688 |
gaacctgtgaatgaatcaatgaacatataagataacaaatcaaagatttacataaaaatcgaaacaaaagaagttacagatactaacctgacagcatttc |
8683589 |
T |
|
| Q |
111 |
tccnnnnnnnnnnnnntccaatagccatttggaaacttgaacttatgatcaaagcaccttgaatccctctcattgtcatagtaaacctctaggaaattca |
210 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683588 |
tccaaaaaccaaaaaatccaatagccatttggaaacttgaacttatgatcaaagcaccttgaatccctctcattgtcatagtaaacctctaggaaattca |
8683489 |
T |
|
| Q |
211 |
aacaaacatgtagacaaagtcagcaaaatgaaaacgctaaagagtgaaacattttccatttataacatgtacgaaaaaa-cagaagcataaaaaatagtt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8683488 |
aacaaacatgtagacaaagtcagcaaaatgaaaacgctaaagagtgaaacattttccatttataacatgtacgaaaaaaacagaagcataaaaaatagtt |
8683389 |
T |
|
| Q |
310 |
tgatttacctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683388 |
tgatttacctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattg |
8683289 |
T |
|
| Q |
410 |
gcaatcgagttccgaacaaagattgaaaaaatgtgctt |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683288 |
gcaatcgagttccgaacaaagattgaaaaaatgtgctt |
8683251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 316 - 446
Target Start/End: Complemental strand, 47579685 - 47579555
Alignment:
| Q |
316 |
acctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatc |
415 |
Q |
| |
|
|||||||||||||||||||||| | | ||||||||||| |||||| || || || ||||| |||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
47579685 |
acctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataattggtatcatgtaagtgtatgaaccaacaactacacttggcaatc |
47579586 |
T |
|
| Q |
416 |
gagttccgaacaaagattgaaaaaatgtgct |
446 |
Q |
| |
|
| |||||||| |||||||||| ||| ||||| |
|
|
| T |
47579585 |
gggttccgaataaagattgaagaaacgtgct |
47579555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University