View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_low_7 (Length: 445)
Name: NF8552_low_7
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 32907768 - 32907493
Alignment:
| Q |
1 |
cagtcaacaagaattttgtggccattcatattgatatagtttcaagttgaaggttcttcaaggatgtggttaaaagagacaactggatagtatttataaa |
100 |
Q |
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| T |
32907768 |
cagtcaacaagaattttgtggccattcatattgatatagtttcaagttgaaggttcttcaaggatgtggttaaaagagacaactggatagtatttttaaa |
32907669 |
T |
|
| Q |
101 |
acacattcttatgcaacatatcaacaatgaactagtaaaacacaataatacaacatagaaaaccagggatagtttgcattacannnnnnnnaatgac--a |
198 |
Q |
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| T |
32907668 |
acacattcttatgcaacatatcaacaatgaactagtaaaacacaataatacaacatagaaaaccagggatagtttgcattaca-tttttttaatgacaaa |
32907570 |
T |
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| Q |
199 |
atttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggggtactcgacccac |
275 |
Q |
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| T |
32907569 |
atttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggggtactagacccac |
32907493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 296 - 426
Target Start/End: Complemental strand, 32906827 - 32906697
Alignment:
| Q |
296 |
tataagcaatatttcgaaaaagattgagaaacattgcattgattaaaactcaagcaagaaagtgaatttgggtatttttcactaattatgatgcagcgtt |
395 |
Q |
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| T |
32906827 |
tataagcaatatttcgaaaaagattgagaaacattgcattgattaaaactcaagcaagaaagtgaatttgggtatttttcactaattatgatgcagcgtt |
32906728 |
T |
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| Q |
396 |
gcaagtaaagttattgtcgaggggaaaacag |
426 |
Q |
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| T |
32906727 |
gcaagtaaagttattgtcgaggggaaaacag |
32906697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 7441709 - 7441643
Alignment:
| Q |
200 |
tttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggggtact |
267 |
Q |
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| T |
7441709 |
tttattaga-aaggagagaagtacaaagagtacttaacccgcaactcaggaaaagtataaggggtact |
7441643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 38956564 - 38956490
Alignment:
| Q |
201 |
ttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggggtactcgacccac |
275 |
Q |
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| T |
38956564 |
ttattatataataagagaagtacaaagagtacttaacccacaaatcaagaaaaatacaaggggtattcgccccac |
38956490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 29566509 - 29566577
Alignment:
| Q |
201 |
ttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggggtactcg |
269 |
Q |
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| T |
29566509 |
ttattagataatgagagaagtatatggagtacttaacccacaattcgagaaaattacaagggatactcg |
29566577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 33810558 - 33810624
Alignment:
| Q |
196 |
acaatttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggg |
262 |
Q |
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|||||||||||||||| ||||||| |||| | ||||||||| |||||| || | |||||||||||| |
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| T |
33810558 |
acaatttattagataaagagagaattacaaaaagtacttaacccacaaatcgggaaaagtacaaggg |
33810624 |
T |
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