View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8552_low_8 (Length: 413)
Name: NF8552_low_8
Description: NF8552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8552_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 25 - 395
Target Start/End: Original strand, 35204872 - 35205233
Alignment:
| Q |
25 |
gcagagaagatttcagtcattattacatgcaacagcaacaacaacacccacatgaaccaacacctgacatcaagcaaataaccagcacctatgaaattgt |
124 |
Q |
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| T |
35204872 |
gcagagaagatttcagtcattattatatgcaacagcaacaacaacacccacatgaaccaacacctgacatcaagcaaataaccagcacctatgaaattgt |
35204971 |
T |
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| Q |
125 |
ttgtcgcttgaaattttggaagtacattgaatttaattcaccaggggataattgctctaattcacaaagccaaacaaatggaatctcaagagataattgc |
224 |
Q |
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| T |
35204972 |
ttgt---------ttttgtaagtaaattgattttaattcaccaggggataattgctctaattcacaaagccaaacaaatggaatctcaagagataattgc |
35205062 |
T |
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| Q |
225 |
tctaattcagaaaacgtgcgacttcttcaactaattttatatctcttccaaaaatttcagtctagtaaaagctattcaattgagattagctcgtagaata |
324 |
Q |
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| T |
35205063 |
tctaattcagaaaacgtgcaacttcttcaactaattttatatctctt-caaaattttcagtctagtaaaagctattcaattgagattagctcgtagaata |
35205161 |
T |
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| Q |
325 |
ataaaacatggagctaatccaatagt-atttttactctatataagataaactaagacattggatgtatgtat |
395 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35205162 |
ataaaacatggagctaatccaatagtaatttttactctatataggataaactaagacattggatgtatgtat |
35205233 |
T |
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