View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8553_high_11 (Length: 235)

Name: NF8553_high_11
Description: NF8553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8553_high_11
NF8553_high_11
[»] chr7 (13 HSPs)
chr7 (1-222)||(4846678-4846899)
chr7 (1-222)||(4712723-4712944)
chr7 (1-220)||(4863129-4863348)
chr7 (3-222)||(4697849-4698068)
chr7 (1-203)||(4784492-4784694)
chr7 (1-203)||(4816921-4817123)
chr7 (3-196)||(4630173-4630366)
chr7 (1-198)||(4652782-4652979)
chr7 (1-196)||(4642968-4643163)
chr7 (1-196)||(4666199-4666394)
chr7 (6-196)||(4636121-4636311)
chr7 (1-196)||(4661068-4661263)
chr7 (7-160)||(4671940-4672093)
[»] chr6 (1 HSPs)
chr6 (39-130)||(5479305-5479396)
[»] chr4 (1 HSPs)
chr4 (1-202)||(18926396-18926597)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4846678 - 4846899
Alignment:
Q  1 gcaacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4846678 gcaacgtgtacaaaggttacatcaatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgataaggtctaaatgaattcatgaatgaaat 4846777  T
Q  101 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4846778 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgt 4846877  T
Q  201 ggccctctcagtgaacatctct 222  Q
    ||  ||||||||||||||||||    
T  4846878 ggtactctcagtgaacatctct 4846899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4712723 - 4712944
Alignment:
Q  1 gcaacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaat 100  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  4712723 gcaacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaat 4712822  T
Q  101 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgt 200  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| ||| |    
T  4712823 cgagttgctctctcagcttcgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacat 4712922  T
Q  201 ggccctctcagtgaacatctct 222  Q
    ||| ||||| ||||||||||||    
T  4712923 ggcactctccgtgaacatctct 4712944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4863348 - 4863129
Alignment:
Q  1 gcaacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaat 100  Q
    ||||||||||||||||||| || ||||||  || |||||||||||||||||||| |||||| ||||||| ||||||| ||||||| ||||||||||| ||    
T  4863348 gcaacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgagat 4863249  T
Q  101 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgt 200  Q
    |||  | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||    
T  4863248 cgaattactctctcagcttcgtcatattcacttggtttctctcattggatattgcaacgaaggtgaggagatgattctcgtttatgacttcatgcaacgt 4863149  T
Q  201 ggccctctcagtgaacatct 220  Q
    ||| ||||| ||||| ||||    
T  4863148 ggcactctccgtgaatatct 4863129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 4697849 - 4698068
Alignment:
Q  3 aacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcg 102  Q
    ||||||| ||||||||||||||||| |   |||||||| || |||||||||   ||||||||||||| ||||||| |||| || ||||||||||||||||    
T  4697849 aacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacaaggtgtaaacgagttcatgaatgaaatcg 4697948  T
Q  103 agatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtgg 202  Q
    || |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| |||||||    
T  4697949 agttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatggaacgtgg 4698048  T
Q  203 ccctctcagtgaacatctct 222  Q
    | ||||  ||||| ||||||    
T  4698049 cactcttcgtgaatatctct 4698068  T

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Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 4784492 - 4784694
Alignment:
Q  1 gcaacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaat 100  Q
    |||| |||||||||||||| || |||||| | ||||| |||||||||||||||| |||||| ||||||| ||||||| | || || ||| ||||||| ||    
T  4784492 gcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaaccaggttctcaacaaggtgtgaacgagttcttgaatgagat 4784591  T
Q  101 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgt 200  Q
     ||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||| || |||||||||||| |||||||||||||||||||||    
T  4784592 tgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgt 4784691  T
Q  201 ggc 203  Q
    |||    
T  4784692 ggc 4784694  T

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Target: chr7; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 4816921 - 4817123
Alignment:
Q  1 gcaacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaat 100  Q
    |||| |||||||||||||| || |||||| | ||||| |||||||||||||||| |||||| ||||||| ||||||| | || || ||| ||||||| ||    
T  4816921 gcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaacctggttctcaacaaggtgttaacgagttcttgaatgagat 4817020  T
Q  101 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgt 200  Q
     ||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||| || |||||||||||| |||||||||||||||||||||    
T  4817021 tgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgt 4817120  T
Q  201 ggc 203  Q
    |||    
T  4817121 ggc 4817123  T

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Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 4630366 - 4630173
Alignment:
Q  3 aacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcg 102  Q
    ||||||||||||||||   ||||||||  ||||||||||||||||||||| |  ||| | || |||| |||||||   || || |||||||| |||||||    
T  4630366 aacgtgtacaaaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctctcaacaaggtgccaacgagttcatgaacgaaatcg 4630267  T
Q  103 agatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgca 196  Q
    || ||||||| |||||||| || ||||||||||| |||||  | ||||||||||| ||  |  ||||||||||||| |||||||| ||||||||    
T  4630266 agttgctctcccagcttcgccacattcacttggtgtcccttgtaggatattgcaatgacaacacagagatgattctggtttatgagttcatgca 4630173  T

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Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 4652979 - 4652782
Alignment:
Q  1 gcaacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaat 100  Q
    |||||||||||||||||| ||||||||||  ||  ||||||||||||||||| |  ||| | || |||| |||||||   || || ||||||||||| ||    
T  4652979 gcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaaggtgccaacgagttcatgaatgagat 4652880  T
Q  101 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaac 198  Q
    |||| | ||||| |||||||| || ||||||||||| |||||| | ||||||||||| || ||  |||| |||||| | |||||||| ||||||||||    
T  4652879 cgagttactctcccagcttcgccacattcacttggtatccctcgtgggatattgcaatgatgacacagaaatgattttggtttatgagttcatgcaac 4652782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4643163 - 4642968
Alignment:
Q  1 gcaacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaat 100  Q
    ||||||||||||||||||   | ||||||  ||||| ||||||| | || || |  ||| |||| |||| |||||||   || || ||||||||||||||    
T  4643163 gcaacgtgtacaaaggttgtgttgatggatccacacttgttgcggttaagcgcctcaaatcgggctctcaacaaggtgccaacgagttcatgaatgaaat 4643064  T
Q  101 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgca 196  Q
    |||| ||||||| |||||||| || ||||||||||| |||||| | |||||||||||||| ||  ||||||||||| | |||||||| ||||||||    
T  4643063 cgagttgctctcccagcttcgccacattcacttggtgtccctcgtgggatattgcaacgatgacacagagatgattttggtttatgagttcatgca 4642968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4666394 - 4666199
Alignment:
Q  1 gcaacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaat 100  Q
    ||||||||||||||||||   ||||||||  ||||| |||||| |||||||| |  ||| | || |||| |||||||   || || |||||||| |||||    
T  4666394 gcaacgtgtacaaaggttgtgtcgatggatccacacttgttgccataaaacgcctcaaatcaggctctcaacaaggtgccaacgagttcatgaacgaaat 4666295  T
Q  101 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgca 196  Q
    |||  |||||||||||||||| || ||||||||||| |||||  | ||||||||||| || ||  ||||||||||||| |||||||| ||||||||    
T  4666294 cgaattgctctctcagcttcgccacattcacttggtatcccttgtgggatattgcaatgacgacacagagatgattctggtttatgagttcatgca 4666199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 4636311 - 4636121
Alignment:
Q  6 gtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgaga 105  Q
    ||||||||||||| ||| ||||||  |||||| |||||||||||||| |  |   |||| |||| |||||||  |||||| |||||||| || ||||||     
T  4636311 gtgtacaaaggtttcattgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgcaaatgagttcatgaacgagatcgagt 4636212  T
Q  106 tgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgca 196  Q
    ||||||| |||||||| || ||||||||||| |||||  | ||||||||||||||  |  ||||||||||||| || ||||| ||||||||    
T  4636211 tgctctcccagcttcgccacattcacttggtatcccttgtgggatattgcaacgacaagacagagatgattctggtctatgagttcatgca 4636121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4661263 - 4661068
Alignment:
Q  1 gcaacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaat 100  Q
    ||||||||||||||||||   | ||||||   |||| ||||||||| ||||| |  ||| |||| |||| ||||||| | || || |||||||| |||||    
T  4661263 gcaacgtgtacaaaggttgtgttgatggatcaacacttgttgcgattaaacgcctcaaatcgggctctcaacaaggtgtcaacgagttcatgaacgaaat 4661164  T
Q  101 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgca 196  Q
    |||| ||||||| |||||||| || ||||| ||||| |||||||| |||||||| || ||  |  || |||||||||| |||||||| ||||||||    
T  4661163 cgagttgctctcccagcttcgccacattcatttggtgtccctcatgggatattgtaatgacaacacatagatgattctggtttatgaattcatgca 4661068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 4672093 - 4671940
Alignment:
Q  7 tgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagat 106  Q
    ||||||||||||   ||||||||  ||||| |||||| |||||||| |  ||| |||| ||||  ||||||   || || |||||||| ||||||||| |    
T  4672093 tgtacaaaggttgtgtcgatggatccacacttgttgccataaaacggctcaaatcgggctctcagcaaggtgccaacgagttcatgaacgaaatcgagtt 4671994  T
Q  107 gctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacga 160  Q
     |||||||| ||||| || ||||||||||| |||||| ||||||||||| ||||    
T  4671993 actctctcaacttcgccacattcacttggtatccctcgttggatattgcgacga 4671940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 5479305 - 5479396
Alignment:
Q  39 gttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattca 130  Q
    ||||| |||||||| | |||||||||||| | |||||||  |||||| ||||| ||||||||||| ||||||||  ||||||||||||||||    
T  5479305 gttgcaataaaacggcttaaaccgggttcacaacaaggtgaaaatgagttcatcaatgaaatcgacatgctctcgaagcttcgtcatattca 5479396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 18926396 - 18926597
Alignment:
Q  1 gcaacgtgtacaaaggttacatcgatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaat 100  Q
    |||||||||| ||||||| |||||||  |  |||||| ||||| ||||||||||  ||||| || |||| ||||||    || || ||||||||||| ||    
T  18926396 gcaacgtgtataaaggtttcatcgataaatccacacccgttgcaataaaacgtctcaaaccaggctctcaacaaggggccaacgagttcatgaatgagat 18926495  T
Q  101 cgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgt 200  Q
    |||| |||||||||| ||||| || |||||  |||| |||||| | || || |||||||   |   ||||||||||||  ||||||| ||||||||||||    
T  18926496 cgagttgctctctcaacttcgccacattcatctggtatccctcgtcgggtactgcaacggcaacaaagagatgattctgatttatgagttcatgcaacgt 18926595  T
Q  201 gg 202  Q
    ||    
T  18926596 gg 18926597  T

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