View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8553_high_2 (Length: 462)
Name: NF8553_high_2
Description: NF8553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8553_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 3 - 445
Target Start/End: Original strand, 14540123 - 14540565
Alignment:
| Q |
3 |
ttagttgaattagagttggaacgaagagagactgatcttggaggtggttgtggattttcatcaacatcccaactaggaacacactgactcattttaggaa |
102 |
Q |
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| T |
14540123 |
ttagttgaattagagttggaacgaagagagactgatcttggaggtggttgtggattttcatcaacatcccaactaggaacacactgactcattttaggaa |
14540222 |
T |
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| Q |
103 |
agaaatgaaaacagtgtttcctaactgtgtttttgctctttttcacatattaaggaaagaatgcatagtttggagacagagagagtggaaaatattgatc |
202 |
Q |
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| T |
14540223 |
agaaatgaaaacagtgtttcctaactgtgtttttgctctttttcacatattaaggaaagaatgcatagtttggagacagagagagtggaaaatattgatc |
14540322 |
T |
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| Q |
203 |
ttagttgtaagggcccatatatgagagcaagtagtgaaagtagcttgtggagttcatttggctacgtaaaaggggagaatctagtccatatgtattggag |
302 |
Q |
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| T |
14540323 |
ttagttgtaagggcccatatatgagagcaagtagtgaaagtagcttgtggagttcatttggctacgtaaaaggggagaatctagtccatatgtattggag |
14540422 |
T |
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| Q |
303 |
tgacaagatttgtgtgtggactcagttctgttttgtcgtttcaaatgattaatgttagatttgttgagtagtgcctttcatacttatacaaatacagcat |
402 |
Q |
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| T |
14540423 |
tgacaagatttgtgtgtggactcagttctgttttgtcgtttcaaatgattaatgttagatttgttgagtagtgcctttcatacttatacaaatacagcat |
14540522 |
T |
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| Q |
403 |
gcattacatatacagatacgtaagtataaatagggaactacct |
445 |
Q |
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| T |
14540523 |
gcattacatatacagatacataagtataaatagggaactacct |
14540565 |
T |
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