View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8553_high_6 (Length: 347)
Name: NF8553_high_6
Description: NF8553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8553_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 40481040 - 40481360
Alignment:
| Q |
18 |
tgaatgtaatttccttcctactcttagatttaggatataagtagacatttgtgacttcatttgagacaagtttgaaaaataaatagaattctcnnnnnnn |
117 |
Q |
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| T |
40481040 |
tgaatgtaatttccttcctactcttagatttaggatataagtagacatttgtgacttcatttgagacaagtttgaaaaataaatagaattctcttttttt |
40481139 |
T |
|
| Q |
118 |
natgattacgagaatggtgagtgagttaggtctcctcttcttaagttcttggattagaactaattaccaccgtagtgattcctcattggcttatcaatct |
217 |
Q |
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| T |
40481140 |
-atgattacgagaatggtgagtgagttaggtctcctcttcttaagttcttggattagaactaattaccaccgtagtgattcctcattggcttatcaatct |
40481238 |
T |
|
| Q |
218 |
ttatggttgtggtgcctttcttcttcatcttctgaatctaatcctaaaatatgtgttttggattttaaagatgtttcaatgattttttaatttgataaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40481239 |
ttatggttgtggtgcctttcttcttcatcttctgaatctaatcctaaaatatgtgttttggattttaaagatttttcaatgattttttaatttgataaca |
40481338 |
T |
|
| Q |
318 |
atggtcaatagtattatctacc |
339 |
Q |
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|||||||||| ||||||||||| |
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| T |
40481339 |
atggtcaataatattatctacc |
40481360 |
T |
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