View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8553_low_10 (Length: 290)

Name: NF8553_low_10
Description: NF8553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8553_low_10
NF8553_low_10
[»] chr8 (4 HSPs)
chr8 (1-180)||(3068773-3068952)
chr8 (1-180)||(3305816-3305995)
chr8 (94-180)||(3069064-3069150)
chr8 (94-180)||(3305618-3305704)
[»] chr6 (16 HSPs)
chr6 (1-180)||(33746711-33746890)
chr6 (5-180)||(16766288-16766463)
chr6 (1-180)||(16368797-16368976)
chr6 (1-153)||(20582805-20582957)
chr6 (12-180)||(11242291-11242459)
chr6 (22-180)||(6851248-6851406)
chr6 (103-180)||(29846978-29847055)
chr6 (100-179)||(16766556-16766635)
chr6 (97-177)||(20582638-20582718)
chr6 (12-180)||(11246259-11246427)
chr6 (114-180)||(33746961-33747027)
chr6 (1-62)||(29846913-29846974)
chr6 (113-180)||(16368640-16368707)
chr6 (113-180)||(29846788-29846855)
chr6 (113-180)||(6851549-6851615)
chr6 (111-161)||(12612291-12612341)
[»] chr7 (10 HSPs)
chr7 (1-179)||(24825757-24825935)
chr7 (3-180)||(32792982-32793159)
chr7 (1-180)||(11324245-11324424)
chr7 (12-180)||(37873416-37873584)
chr7 (190-290)||(35802171-35802271)
chr7 (12-180)||(37879058-37879226)
chr7 (94-180)||(24825558-24825644)
chr7 (94-179)||(32792783-32792868)
chr7 (112-176)||(9402563-9402627)
chr7 (113-176)||(11324056-11324119)
[»] scaffold0428 (2 HSPs)
scaffold0428 (1-178)||(7491-7668)
scaffold0428 (94-178)||(7765-7849)
[»] chr4 (14 HSPs)
chr4 (1-178)||(15874229-15874406)
chr4 (1-180)||(20878692-20878871)
chr4 (5-180)||(41315898-41316073)
chr4 (1-180)||(42305904-42306082)
chr4 (1-180)||(23254574-23254753)
chr4 (10-180)||(38484460-38484631)
chr4 (1-180)||(55893213-55893389)
chr4 (94-179)||(23254377-23254462)
chr4 (95-180)||(42306195-42306280)
chr4 (98-180)||(15874522-15874604)
chr4 (99-180)||(55893466-55893547)
chr4 (97-180)||(41316192-41316274)
chr4 (111-179)||(38485175-38485243)
chr4 (135-179)||(20878988-20879032)
[»] chr5 (6 HSPs)
chr5 (1-180)||(31155539-31155718)
chr5 (1-179)||(39761511-39761689)
chr5 (1-179)||(31155893-31156071)
chr5 (94-180)||(39760423-39760509)
chr5 (94-180)||(31156183-31156269)
chr5 (119-180)||(31155369-31155430)
[»] chr2 (6 HSPs)
chr2 (1-180)||(12414034-12414213)
chr2 (1-180)||(12426094-12426273)
chr2 (1-180)||(4731880-4732059)
chr2 (94-179)||(4731715-4731800)
chr2 (113-180)||(12413837-12413904)
chr2 (113-180)||(12425897-12425964)
[»] chr3 (13 HSPs)
chr3 (1-180)||(33794433-33794611)
chr3 (3-180)||(31724352-31724529)
chr3 (1-180)||(14783734-14783913)
chr3 (1-179)||(40560656-40560834)
chr3 (1-180)||(20124654-20124834)
chr3 (1-180)||(5048003-5048182)
chr3 (1-171)||(2439967-2440137)
chr3 (94-180)||(5048294-5048380)
chr3 (94-180)||(2439769-2439855)
chr3 (111-180)||(14784027-14784097)
chr3 (113-180)||(31724657-31724724)
chr3 (98-180)||(40560473-40560554)
chr3 (98-179)||(33794727-33794806)
[»] scaffold0291 (2 HSPs)
scaffold0291 (1-180)||(10953-11132)
scaffold0291 (1-180)||(11252-11431)
[»] chr1 (11 HSPs)
chr1 (1-180)||(52331604-52331783)
chr1 (1-180)||(34492426-34492605)
chr1 (1-180)||(7709899-7710078)
chr1 (1-179)||(37646854-37647032)
chr1 (43-178)||(13618340-13618475)
chr1 (94-180)||(52331406-52331492)
chr1 (94-179)||(7709700-7709785)
chr1 (59-178)||(13618539-13618658)
chr1 (114-179)||(34492237-34492302)
chr1 (113-180)||(13618255-13618322)
chr1 (147-180)||(37646741-37646774)
[»] scaffold0184 (2 HSPs)
scaffold0184 (1-179)||(7155-7328)
scaffold0184 (94-180)||(7017-7103)
[»] scaffold0032 (2 HSPs)
scaffold0032 (1-140)||(32959-33100)
scaffold0032 (94-176)||(33206-33288)
[»] scaffold1408 (1 HSPs)
scaffold1408 (67-178)||(1745-1856)
[»] scaffold0021 (1 HSPs)
scaffold0021 (111-161)||(12200-12250)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 3068952 - 3068773
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||       |||||||    
T  3068952 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcgggga 3068853  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3068852 ctgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 3068773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 3305816 - 3305995
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||       |||||||    
T  3305816 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagatttttttgcgggga 3305915  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||| ||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3305916 ctgatttctaaatttttattttacaaggaagaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 3305995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 3069064 - 3069150
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3069064 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 3069150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 3305704 - 3305618
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  3305704 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagttcaatatttaagcct 3305618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 33746890 - 33746711
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||       || ||||    
T  33746890 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcaggga 33746791  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33746790 ttgatttctgaatttttattttacatggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 33746711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 16766463 - 16766288
Alignment:
Q  5 ggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcggggactga 104  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||       |||||||||||    
T  16766463 ggttcaatcagcgtgcgccacgtaggcattttggtgacttgccatgacttaaatgggcccaagggtatttttaaaagacagatttttttgcggggactga 16766364  T
Q  105 tttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||||||||||  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  16766363 tttctgaatttttattttacaaagaccaaaacttaaatgggtcatatttgcagggacgagtgcaatatttaagcct 16766288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 16368797 - 16368976
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |       |  ||||    
T  16368797 aatgggttcaattagcgtgcgccacgtaggcattttggtgacttgtcatgatttaaatgggcccaggggtatttttaaaagacaaatttttttgtaggga 16368896  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||||| |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  16368897 ctgatttctgaattttcattttacacggaccaaaacttaaacggatcatatttgcagggacgagtgcaatatttaagcct 16368976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 20582805 - 20582957
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||       ||||||     
T  20582805 aatgggttcaatcagcgtgcgccacgtaggcattttgatgacttgtcatgacttaaatgggcccagggatatttttaaaagacagatttttttgcggggt 20582904  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatattt 153  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  20582905 ctgatttctaaatttttattttacaaggaccaaaacttaaacgggccatattt 20582957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 11242459 - 11242291
Alignment:
Q  12 tcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcggggactgatttctga 111  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||||| ||||| |||| |||||||||||||       ||||||||||||||||||    
T  11242459 tcagcgtacgccacgtaggcattttggtcacctgtcatgacttaaatgggtccatgagtatttttaaaagacagatttttttgcggggactgatttctga 11242360  T
Q  112 atttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||| ||| ||||||||||| | |||||||||   ||||||||||||||||||||||||    
T  11242359 atttttattttacaaggatcaaaacttaaatgagccatatttatggggacgagtgcaatatttaagcct 11242291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 6851406 - 6851248
Alignment:
Q  22 ccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcggggactgatttctgaatttttattt 121  Q
    ||||||| |||||||||||||||||||||||||||||||  ||| |||||| ||||||||||||        | ||| ||||||||||||||||||||||    
T  6851406 ccacgtaagcattttggtgacttgtcatgacttaaatggatccaggggtatttttaaaagacagttttttttgtgggaactgatttctgaatttttattt 6851307  T
Q  122 tacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||  |||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  6851306 tacaaagaccaaaacttaaacggatcatatttgcatggacgagtgcaatatttaagcct 6851248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 29846978 - 29847055
Alignment:
Q  103 gatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846978 gatttctgaatttttattttacagagaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 29847055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 16766556 - 16766635
Alignment:
Q  100 actgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  16766556 actgatttctgaatttttattttacaaggaccaaaacataaacgggccatatttgcagggacgattgcaatatttaagcc 16766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 20582718 - 20582638
Alignment:
Q  97 gggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 177  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  20582718 gggactgatttctgaatttttattttacaaggaccaaaacttaaacggactatatttgtagggacgagtgcaatatttaag 20582638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 11246259 - 11246427
Alignment:
Q  12 tcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcggggactgatttctga 111  Q
    |||||||||| ||||||||||||||||| || | ||||||||||||| |  | | |||||| | ||||||||| |       | |||||||||||| |||    
T  11246259 tcagcgtgcgtcacgtaggcattttggtaacctttcatgacttaaatagatctaggggtatttataaaagacaaatttttttgtggggactgatttgtga 11246358  T
Q  112 atttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||| ||||  |||||||||| |  |||||||||||||| |||||||||||||||||||    
T  11246359 atttttattttacaaggactcaaacttaaacagatcatatttgcagggatgagtgcaatatttaagcct 11246427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 33746961 - 33747027
Alignment:
Q  114 ttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33746961 tttttttttacaaggacgaaaacttaaacgggccatatttgcagggacgggtgcaatatttaagcct 33747027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29846913 - 29846974
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggc 62  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  29846913 aatgggttcaatcagcttgcgccacgtaggcaatttggtgacttgtcatgacttaaatgggc 29846974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 16368707 - 16368640
Alignment:
Q  113 tttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||| ||||||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  16368707 ttttttttttacagggacgaaaacttaaacatgccatatttgcagggacgagtgcaatatttaagcct 16368640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 29846855 - 29846788
Alignment:
Q  113 tttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||| ||||||| |||| |||||||||| |  |||||||||||||||||||||||||||||||||||    
T  29846855 ttttttttttacagggacgaaaacttaaatgacccatatttgcagggacgagtgcaatatttaagcct 29846788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 6851549 - 6851615
Alignment:
Q  113 tttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||| ||||||| | || |||||||||||| ||||||||||||| |||| |||||||||||||||||    
T  6851549 ttttttttttacaggaacgaaaacttaaacgagccatatttgcagagacg-gtgcaatatttaagcct 6851615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 12612291 - 12612341
Alignment:
Q  111 aatttttattttacatggaccaaaacttaaacgggccatatttgcagggac 161  Q
    ||||||||||||||| |||| |||||| ||||| | |||||||||||||||    
T  12612291 aatttttattttacagggactaaaactaaaacgaggcatatttgcagggac 12612341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 24825757 - 24825935
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||       |||||||    
T  24825757 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgttatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcgggga 24825856  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24825857 ctgatttctgaatttttatttttcaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 24825935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 32792982 - 32793159
Alignment:
Q  3 tgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcggggact 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||       || ||||||    
T  32792982 tgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcagggact 32793081  T
Q  103 gatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32793082 gatttctgaatttttattttacaaggaccaaaacttaaacgggctatatttgcagggacgagtgcaatatttaagcct 32793159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 11324245 - 11324424
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||       |||| ||    
T  11324245 aatgcgttcaatcagcgtgcgccatgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcggaga 11324344  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
     |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  11324345 ttgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgaatgcaatatttaagcct 11324424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 37873584 - 37873416
Alignment:
Q  12 tcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcggggactgatttctga 111  Q
    |||||| |||||||||   |||||||||||| |||||| | ||||||||||||| |||||| |||||||||||||       || |||||||||||||||    
T  37873584 tcagcgcgcgccacgtgtacattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaattttttgcagggactgatttctga 37873485  T
Q  112 atttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37873484 atttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 37873416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 35802271 - 35802171
Alignment:
Q  190 tctatgtatgattctcattttaacattgacaacacaagggacattcgtcttgattatgctcttttcacacctcctaccgtgttggtgattgatggttatg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35802271 tctatgtatgattctcattttaacattgacaacacaagggacattcgtcttgattatgctcttttcacacctcctaccgtgttggtgattgatggttatg 35802172  T
Q  290 a 290  Q
    |    
T  35802171 a 35802171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 37879058 - 37879226
Alignment:
Q  12 tcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcggggactgatttctga 111  Q
    |||||| |||||||||   |||||||||||| |||||| | ||||||||||||| |||||| |||||||||||||       || |||| ||||||||||    
T  37879058 tcagcgcgcgccacgtgtacattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaattttttgcagggattgatttctga 37879157  T
Q  112 atttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  37879158 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtacaatatttaagcct 37879226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 24825644 - 24825558
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24825644 gcggagactgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgagtgcaatatttaagcct 24825558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 32792868 - 32792783
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32792868 gcggggattgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcc 32792783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 9402627 - 9402563
Alignment:
Q  112 atttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaa 176  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9402627 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaa 9402563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 11324119 - 11324056
Alignment:
Q  113 tttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaa 176  Q
    ||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  11324119 ttttttttttacagggacgaaaacttaatcgggccatatttgcagggacgagtgcaatatttaa 11324056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 7668 - 7491
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||       |||||||    
T  7668 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcgggga 7569  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 178  Q
     |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7568 ttgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 7765 - 7849
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 178  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7765 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacgagtgcaatatttaagc 7849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 15874406 - 15874229
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||| |       |||||||    
T  15874406 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgccttaaatgcgcccaggggtatttttaaaagacaaatttttttgcgggga 15874307  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 178  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874306 ctgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 15874229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 20878871 - 20878692
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||       |||||||    
T  20878871 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatttttttgcgggga 20878772  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |||||||||    
T  20878771 ctgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggatgagtggaatgtttaagcct 20878692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 41316073 - 41315898
Alignment:
Q  5 ggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcggggactga 104  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||       |||||||||||    
T  41316073 ggttcaatcagcgtgcaccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcggggactga 41315974  T
Q  105 tttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  41315973 tttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagcct 41315898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 42306082 - 42305904
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||       |||||||    
T  42306082 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggac-aggggtatttttaaaagacagatttttttgcgggga 42305984  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42305983 ctgatttctgaatttttattttacgaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 42305904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 23254574 - 23254753
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| ||| | | ||||||||||||| |||||||||||||||||||||||||||| ||||| | |||| |||||||||||||       |||||||    
T  23254574 aatgggttcaattaacatgcgccacgtaggtattttggtgacttgtcatgacttaaatgagcccaggagtatttttaaaagacagatttttttgcgggga 23254673  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23254674 ctgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 23254753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 38484631 - 38484460
Alignment:
Q  10 aatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnn-gcggggactgatttc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||        ||   ||||||||||    
T  38484631 aatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatggacccagggatatttttaaaagacagattttttttgcaaagactgatttc 38484532  T
Q  109 tgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  38484531 tgaatttttattttacaaggaccaaaacttaaacgggccatatttacagagacgagtgcaatatttaagcct 38484460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 55893389 - 55893213
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||||       |||||||    
T  55893389 aatgggttcaattagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgagcccagggctatttttaaaagacagatttttttgcgggga 55893290  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
       ||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  55893289 ---atttctgaatttttattttacaataaccaaaacttaaacgggccatatttgcagagacgggtgcaatatttaagcct 55893213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 23254462 - 23254377
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23254462 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 23254377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 42306195 - 42306280
Alignment:
Q  95 cggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  42306195 cggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttggagggacgagttcaatatttaagcct 42306280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 15874522 - 15874604
Alignment:
Q  98 ggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  15874522 ggactgatttctgaatttttattttacaaagaccaaaacttaaacggggcatatttgcagggacgagtgcaatacttaagcct 15874604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 55893466 - 55893547
Alignment:
Q  99 gactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  55893466 gactgatttctgaatttttatttttcaaggaccaaaacttaaacgagccatatttacagggacgagtgcaatatttaagcct 55893547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 41316192 - 41316274
Alignment:
Q  97 gggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  41316192 gggacggatttctgaatttt-attttacaaggaccaaaacttaaacgaaccatatttgcagggacgagtgcaatatttaagcct 41316274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 38485175 - 38485243
Alignment:
Q  111 aatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    ||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  38485175 aattttttttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 38485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 20878988 - 20879032
Alignment:
Q  135 acttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  20878988 acttaaacgggccatatttgcagggacgagtgtaatatttaagcc 20879032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 31155539 - 31155718
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |       |||||||    
T  31155539 aatggattcaatcagcgtgcgtcacgtaggcattttggtgacttgtcatgacttaaatgggcccaagggtatttttaaaagacatatttttttgcgggga 31155638  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31155639 ctgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 31155718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 39761511 - 39761689
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||       || ||||    
T  39761511 aatgggttcaatcagcgtgtgccacgtaagcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatttttttgcaggga 39761610  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  39761611 ctgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacaagtgcaatatttaagcc 39761689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 31156071 - 31155893
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |       ||| |||    
T  31156071 aatgagttcaatcagcgtgcgccacgtaagcattttggtgacttgtcataacttaaatgggcccaggggtatttttaaaagacatatttttttgcgagga 31155972  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||  |||||||||||||    
T  31155971 ctgatttctgaatttttattttacaaggaccaaaacttaaacgtgtcatatttgcagggacgagatcaatatttaagcc 31155893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 39760509 - 39760423
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39760509 gcggggactaatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 39760423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 31156183 - 31156269
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  31156183 gcggggactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttgtagggacgaatgcaatatttaagcct 31156269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 31155430 - 31155369
Alignment:
Q  119 ttttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||| |||| |||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  31155430 ttttacaaggacaaaaaattaaacgggccatatttgcatggacgagtacaatatttaagcct 31155369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 12414034 - 12414213
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||       |||||||    
T  12414034 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcgggga 12414133  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12414134 ctgatttctgaatttttattttacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 12414213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 12426094 - 12426273
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||       |||||||    
T  12426094 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcgggga 12426193  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12426194 ctgatttctgaatttttattttacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 12426273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 4731880 - 4732059
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||| |       |||||||    
T  4731880 aatgggttcaatcagcgtgcgccacgtagacattttggtgacttgtcatgacttaaatgggcccagggatatttttaaaagacatatttttttgcgggga 4731979  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  4731980 ctgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggatgagtgcaatatttaagcct 4732059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 4731800 - 4731715
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4731800 gcgggaactgatttctgaatttttattttacaaggaccaaatcttaaacgggccatatttgcagggacgagtgcaatatttaagcc 4731715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 12413904 - 12413837
Alignment:
Q  113 tttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||| ||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12413904 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcct 12413837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 12425964 - 12425897
Alignment:
Q  113 tttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||| ||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12425964 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcct 12425897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 33794611 - 33794433
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||       |||||||    
T  33794611 aatgagttcaatcagcgtgtgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttt-gcgggga 33794513  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33794512 ctgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 33794433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 31724529 - 31724352
Alignment:
Q  3 tgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcggggact 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| |       |||||||||    
T  31724529 tgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggtccaagggtatttttaaaagacaaatttttttgcggggact 31724430  T
Q  103 gatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  31724429 gatttctgaatttttattttacaaggaccaaaatttaaacgggccatatttgcatggacgagtgcaatatttaagcct 31724352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 14783913 - 14783734
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |||| |       |||||||    
T  14783913 aatgggttcaatcagcgtacgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggcatttttaaacgacaaatttttttgcgggga 14783814  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14783813 ctgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcct 14783734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 40560656 - 40560834
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||       |||||||    
T  40560656 aatgggttcaatcagcgtgtgccacgtaggtattttagtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcgggga 40560755  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40560756 ctgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 40560834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 20124834 - 20124654
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggccc-atgggtatgtttaaaagacagannnnnnngcgggg 99  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||| |       ||||||    
T  20124834 aatgagttcaatcagcgtgcgctacgtaggcattttggtgacttgtcattacttaaatgggccccaggggtatttttaaaagacatatttttttgcgggg 20124735  T
Q  100 actgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  20124734 actgatttctgaatttttattttacaaagaccaaaacttaaacggaccatatttacagggacgagtgcaatatttaagcct 20124654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 5048182 - 5048003
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||| ||||||||| |||       |||||||    
T  5048182 aatgagttcaatcagcgtgtgccacgtaggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagatagattttttcgcgggga 5048083  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| | |||||||||||||||| |||||||| || |||||||||||||||||||||||    
T  5048082 ctgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaatatttaagcct 5048003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 2439967 - 2440137
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||||       |||||||    
T  2439967 aatgagttcaatcagcgtgcgccatgtaggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagacagatttttttgcgggga 2440066  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaata 171  Q
    ||||||||||||||||||||||||| | |||||||||||||||| |||||||| || ||||||||||||||    
T  2440067 ctgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaata 2440137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 5048294 - 5048380
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5048294 gcggggactgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 5048380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 2439855 - 2439769
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2439855 gcggggattgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 2439769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 14784027 - 14784097
Alignment:
Q  111 aatttttatttt-acatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14784027 aatttttatttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 14784097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 31724657 - 31724724
Alignment:
Q  113 tttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||| |||||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31724657 tttttaatttaccgggacaaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcct 31724724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 40560554 - 40560473
Alignment:
Q  98 ggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||||||||| ||||||| |||| |||| | ||||| | |||||||||||||||| |||||||||||||||||    
T  40560554 ggactgatttctgaattttt-ttttacagggactaaaattaaaacgaggcatatttgcagggacgggtgcaatatttaagcct 40560473  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 33794727 - 33794806
Alignment:
Q  98 ggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    |||||||||||||| |||||  |||||| |||| |||| | ||||| | |||||||||||||||||||||||||||||||||    
T  33794727 ggactgatttctgatttttt--tttacagggactaaaattaaaacgaggcatatttgcagggacgagtgcaatatttaagcc 33794806  T

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Target: scaffold0291 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 11132 - 10953
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||| |||||||||||||       ||| |||    
T  11132 aatgggttcaatcagcgtgcgccacgtaggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagatttttttgcgagga 11033  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11032 ctgatttctgaatttttattttacaaggaccaaaatttaaacgggccatatttgcagggacgagtgcaatatttaagcct 10953  T

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Target: scaffold0291; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 11252 - 11431
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||| |||||||||||||       ||| |||    
T  11252 aatgggttcaatcagcgtgcgccacgtaggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagatttttttgcgagga 11351  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11352 ctgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 11431  T

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Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 52331604 - 52331783
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| | |       |||||||    
T  52331604 aatgggttcaatcagcgtgcgccacgtaggcattttgatgacttgtcatgacttaaatgggcccaggggtatttttaaaagataaatttttttgcgggga 52331703  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52331704 ctgatttctaaatttttattttacaaggatcaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 52331783  T

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Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 34492426 - 34492605
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||       ||||| |    
T  34492426 aatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatttttttgcgggaa 34492525  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||| ||||||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||||||||    
T  34492526 ctgatgtctgaatttttattttacaaggaccaaaacttaaacagaccatatttgcaggaacgagtgcaatatttaagcct 34492605  T

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Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 7709899 - 7710078
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||       ||  |||    
T  7709899 aatgggttcaatcagtgtgtgccacgtaggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagatttttttgcaagga 7709998  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7709999 ctgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 7710078  T

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Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 37646854 - 37647032
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcgggga 100  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||       ||  |||    
T  37646854 aatgagttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcacgga 37646953  T
Q  101 ctgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||  |||| |||||||||||||||    
T  37646954 ctgatttttgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagaaacgaatgcaatatttaagcc 37647032  T

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Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 13618340 - 13618475
Alignment:
Q  43 ttgtcatgacttaaatgggcccatgggtatgtttaaaagacagannnnnnngcggggactgatttctgaatttttattttacatggaccaaaacttaaac 142  Q
    ||||||||||||||||||||||| |||||| |||||||||||||       || |||| |||||||||| ||||||||||||| ||||||||||||||||    
T  13618340 ttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgctgggattgatttctgattttttattttacaaggaccaaaacttaaac 13618439  T
Q  143 gggccatatttgcagggacgagtgcaatatttaagc 178  Q
    ||||||||||||||||||||| ||||||||||||||    
T  13618440 gggccatatttgcagggacgaatgcaatatttaagc 13618475  T

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Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 52331492 - 52331406
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52331492 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 52331406  T

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Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 7709785 - 7709700
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7709785 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagttcaatatttaagcc 7709700  T

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Target: chr1; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 13618539 - 13618658
Alignment:
Q  59 gggcccatgggtatgtttaaaagacagannnnnnngcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagg 158  Q
    ||||||| |||||| |||||||||||||       || |||| |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||    
T  13618539 gggcccaggggtatttttaaaagacagatttttttgctgggattgatttctgattttttattttacaaggaccaaaacttaaacggaccatatttgcagg 13618638  T
Q  159 gacgagtgcaatatttaagc 178  Q
    ||||| ||||||||||||||    
T  13618639 gacgaatgcaatatttaagc 13618658  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 34492302 - 34492237
Alignment:
Q  114 ttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34492302 tttttttttacacggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 34492237  T

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Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 13618322 - 13618255
Alignment:
Q  113 tttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||| ||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  13618322 ttttttttttacagggactaaaacttaaacgggtcatatttgcagggaagagtgcaatatttaagcct 13618255  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 37646774 - 37646741
Alignment:
Q  147 catatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||||||||||||| ||||||||||||||||    
T  37646774 catatttgcagggacgaatgcaatatttaagcct 37646741  T

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Target: scaffold0184 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 7155 - 7328
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaa-gacagannnnnnngcgggg 99  Q
    |||||||| |||||||||||||||||||      ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||       ||||||    
T  7155 aatgggttcaatcagcgtgcgccacgta------ttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaaagacagatttttttgcgggg 7248  T
Q  100 actgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 179  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  7249 actgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgaatccaatatttaagcc 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 7103 - 7017
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 180  Q
    ||||||| |||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  7103 gcggggattgatttctgaatttttattttataaggaccaaaacttaaacggaccatatttgcaggaacgagtgcaatatttaagcct 7017  T

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Target: scaffold0032 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 33100 - 32959
Alignment:
Q  1 aatgggtttaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccatgggtatgtttaaaagacaga--nnnnnnngcggg 98  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||         |||||    
T  33100 aatgggttcaatcagcgtgcgccacataggcattttggtgacttgtcatgacttatatgggtccaggggtatttttaaaagacagatttttttttgcggg 33001  T
Q  99 gactgatttctgaatttttattttacatggaccaaaacttaa 140  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  33000 gactgatttctgaatttttattttacaaggaccaaaacttaa 32959  T

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Target: scaffold0032; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 33206 - 33288
Alignment:
Q  94 gcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaa 176  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  33206 gcggggactgatttctgaatttttattttacaaggaccaaaacataaacggaccatatttgcagggacgagtgcaatatttaa 33288  T

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Target: scaffold1408 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 1856 - 1745
Alignment:
Q  67 gggtatgtttaaaagacagannnnnnngcggggactgatttctgaatttttattttacatggaccaaaacttaaacgggccatatttgcagggacgagtg 166  Q
    |||||| |||||||||||||       ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  1856 gggtatttttaaaagacagatttttttgcggggattgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacgagtg 1757  T
Q  167 caatatttaagc 178  Q
    ||||||||||||    
T  1756 caatatttaagc 1745  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 12250 - 12200
Alignment:
Q  111 aatttttattttacatggaccaaaacttaaacgggccatatttgcagggac 161  Q
    ||||||||||||||| |||| |||||| ||||| | |||||||||||||||    
T  12250 aatttttattttacagggactaaaactaaaacgaggcatatttgcagggac 12200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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