View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8553_low_12 (Length: 245)
Name: NF8553_low_12
Description: NF8553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8553_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 26722140 - 26721915
Alignment:
| Q |
1 |
ctgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtttttgagtactgagagcattgatg |
100 |
Q |
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| T |
26722140 |
ctgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatg |
26722041 |
T |
|
| Q |
101 |
gaaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26722040 |
gaaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgta |
26721941 |
T |
|
| Q |
201 |
gaacctataaagtgtagatagaaaca |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26721940 |
gaacctataaagtgtagatagaaaca |
26721915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 45116782 - 45116994
Alignment:
| Q |
1 |
ctgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtttttgagtactgagagcattgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
45116782 |
ctgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatg |
45116881 |
T |
|
| Q |
101 |
gaaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgca |
200 |
Q |
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| T |
45116882 |
gaaattacacaacaaatagagtcttaaaccatttt-------------ctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgca |
45116968 |
T |
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| Q |
201 |
gaacctataaagtgtagatagaaaca |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
45116969 |
gaacctataaagtgtagatagaaaca |
45116994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2987596 - 2987384
Alignment:
| Q |
1 |
ctgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtttttgagtactgagagcattgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
2987596 |
ctgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagaacattgatg |
2987497 |
T |
|
| Q |
101 |
gaaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgca |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2987496 |
gaaattacacaacaaatagagtattaaaccattttctc-------------aaatcataatccaaggctcatggtttttcttctttgaaccatatttgca |
2987410 |
T |
|
| Q |
201 |
gaacctataaagtgtagatagaaaca |
226 |
Q |
| |
|
||||||||||||| |||||||||||| |
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|
| T |
2987409 |
gaacctataaagtatagatagaaaca |
2987384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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