View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8553_low_2 (Length: 595)
Name: NF8553_low_2
Description: NF8553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8553_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 298998 - 299560
Alignment:
| Q |
18 |
agagacaaatttggtgtgagatcttcaagtggagaacatcagaatctaacacacaaaaccaatcctaaacatggtgatcttgatattcccaatgacacag |
117 |
Q |
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| T |
298998 |
agagacaaatttggtgtgagatcttcaagtggagaacatcagaatctaacacacaaaaccaatcctaaacatggtgatcttgatattcccaatgacacag |
299097 |
T |
|
| Q |
118 |
tcatcaggcaagcccaagtggaatctaagaaaggaagaaagaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggaga |
217 |
Q |
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| T |
299098 |
tcgtcaggcaagcccaagtggaatctaagaaaggaagaaagaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggaga |
299197 |
T |
|
| Q |
218 |
aggagctggagtcagaggtaagattatgcctccttatatgaagttttgtttggaatatttttatttgttgaagactaatgcctgggttaatttaggtaca |
317 |
Q |
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| T |
299198 |
aggagctggagtcagaggtaagattatgcctcctcatatgaagttttgtttggaatatttttatctgctgaagactaatgcctgggttaatttaggtaca |
299297 |
T |
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| Q |
318 |
tgtacaaatgttttagatggattactaactggtttcccctttcctttcaacagcttcagatttttctgtggggcaatttcagtttttgnnnnnnntcact |
417 |
Q |
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| T |
299298 |
tgtacaaatgttttagatggattactaactggtttcccctttcctttcaacagcttcagatttttctgtggcgcaatttcagtttttg-aaaaaatcact |
299396 |
T |
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| Q |
418 |
tttggttcatgggcacttgaattatcagtatgttgtttatttagttttgtataatttagcttctaacacaatgctgtctttgttttgattctattctggt |
517 |
Q |
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| T |
299397 |
tttggttcatgggcacttgaattatcagtatgttgtttatttagttttgtataatttagcttctaacacaatgctgtctttgttttgattctattctggt |
299496 |
T |
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| Q |
518 |
gtgtacagttttctttcaacgctattgtctcaatcatctttgttttaacttcttcgtctgatgt |
581 |
Q |
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| T |
299497 |
gtgtacagttttctttcaacgctattgtctcaatcatctttgttttaacttcttcgtctgatgt |
299560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 301156 - 301514
Alignment:
| Q |
18 |
agagacaaatttggtgtgagatcttcaagtggagaacatcagaatctaacacacaaaaccaatcctaaacatggtgatcttgatattcccaatg--acac |
115 |
Q |
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| T |
301156 |
agagacaaatttggtgtgagatcttcaagtggagaacatcagaatctaaagcacaaaaccaatgctaaacatggtgatcttgatattcccaatgatacaa |
301255 |
T |
|
| Q |
116 |
agtcatcaggcaagcccaagtggaatctaagaaaggaag---aaagaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatctt |
212 |
Q |
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| T |
301256 |
agtcatcaagcatgcccaagtggaatttaggaaaagaagagaaaaaaaacactactccattggcactcataattgatggaaccagtttggtctatacctt |
301355 |
T |
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| Q |
213 |
ggagaaggagctggagtcagaggtaagattatgcctccttatatg-aagttttgtttggaatatttttat-ttgttgaagactaatgcctgggttaattt |
310 |
Q |
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| T |
301356 |
ggagaaagaactggagtcagaggcaatattatccttctttatatgaaatttttgtttgaaatatttttatattttggaaaactaatgcttgggttaattt |
301455 |
T |
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| Q |
311 |
aggtacatgtacaaatgttttagatggattactaactggtttcccctttcctttcaacag |
370 |
Q |
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| T |
301456 |
-ggtgcatattcaactgttttagattgaatactaactagtttaccatctcctttcaacag |
301514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 27465340 - 27465123
Alignment:
| Q |
23 |
caaatttggtgtgagatcttcaagtggagaacatcagaatctaacacacaaaaccaatcctaaacatggtgatcttgatattcccaatg--acacagtca |
120 |
Q |
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||||| |||||||||||||||| || ||| |||||||||| | | ||||||||| || |||||||||| ||||||||| |||||| || ||||| |
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| T |
27465340 |
caaatatggtgtgagatcttcatgtagagggaatcagaatctgaggaataaaaccaatgctgaacatggtgaacttgatatttccaatggttcaaagtca |
27465241 |
T |
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| Q |
121 |
tcaggcaagcccaagtggaatctaagaaaggaagaaagaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaagg |
220 |
Q |
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| T |
27465240 |
atgagtttgcccaaatggaatccaggaaacgaagaaggaactgatattccattggcactcataattgatgggaatagtttggtttatattttggagaagg |
27465141 |
T |
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| Q |
221 |
agctggagtcagaggtaa |
238 |
Q |
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| T |
27465140 |
aattggagtcagaggtaa |
27465123 |
T |
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