View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8553_low_5 (Length: 414)

Name: NF8553_low_5
Description: NF8553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8553_low_5
NF8553_low_5
[»] chr7 (4 HSPs)
chr7 (30-396)||(2722188-2722554)
chr7 (270-393)||(2696288-2696412)
chr7 (1-83)||(2722078-2722161)
chr7 (49-142)||(22244605-22244699)
[»] chr8 (1 HSPs)
chr8 (56-189)||(43933585-43933718)
[»] chr3 (5 HSPs)
chr3 (58-142)||(40458094-40458178)
chr3 (75-136)||(34919789-34919850)
chr3 (49-142)||(940557-940650)
chr3 (58-140)||(41301762-41301844)
chr3 (75-140)||(14753772-14753837)
[»] chr1 (5 HSPs)
chr1 (49-140)||(18507556-18507648)
chr1 (62-107)||(15968111-15968156)
chr1 (34-93)||(3776279-3776339)
chr1 (77-137)||(20805771-20805831)
chr1 (56-108)||(47827533-47827585)
[»] chr2 (1 HSPs)
chr2 (62-140)||(31275015-31275093)
[»] chr4 (1 HSPs)
chr4 (61-126)||(43535470-43535535)
[»] chr6 (2 HSPs)
chr6 (45-93)||(2041566-2041614)
chr6 (57-105)||(9871664-9871712)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 396
Target Start/End: Original strand, 2722188 - 2722554
Alignment:
Q  30 tggttacaatctggaaaattagggtttatctgtttaggtcatgttttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgt 129  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  2722188 tggttacaatctagaaaactagggtttatctgtttaggtcatgttttgagaatactctcaagatggatatttatagtctaccttgggcttgtatttccgt 2722287  T
Q  130 gacttaggccctaggtcacgcctgttgcgtttatgatgcgatctagatgcttctagaagtttttcaaaggcgacgactcagatgggggtgctatgccctc 229  Q
    ||||||| | ||||||||| ||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||     
T  2722288 gacttagactctaggtcacaccttttgcgtttatgatgcgatctagattcttttagaagtttttcgaaggcgacgactcagatgggggtgctatgccctt 2722387  T
Q  230 aatataatattggtttgtgatctctacaaaattcttacttgagtagttgagttcaaaagtttatatgtaaagtgaatgtttaaaagccaaacattgcatt 329  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2722388 aatataatattggtttgtgatctctataaaattcttacttgagtagttgatttcaaaagtttatatgtaaagtgaatgtttaaatgccaaacattgcatt 2722487  T
Q  330 gaacttaggagaccttcggatcatggttcaagtgttttaaacaactcaattgagacaaaccatactc 396  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2722488 gaacttaggagaccttcggatcatggttcaaatgttttaaacaactcaattgagacaaaccatactc 2722554  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 270 - 393
Target Start/End: Complemental strand, 2696412 - 2696288
Alignment:
Q  270 gagtagttgagttcaaaagtttatatgta-aagtgaatgtttaaaagccaaacattgcattgaacttaggagaccttcggatcatggttcaagtgtttta 368  Q
    ||||||||||||||| ||||||||||||| ||| |||||||| ||| |||||||| |||| ||||||| |||||||||||||||||||||||||| ||||    
T  2696412 gagtagttgagttcagaagtttatatgtataagcgaatgttttaaaaccaaacatcgcatggaacttaagagaccttcggatcatggttcaagtgcttta 2696313  T
Q  369 aacaactcaattgagacaaaccata 393  Q
    |||||||||||||||||||||||||    
T  2696312 aacaactcaattgagacaaaccata 2696288  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2722078 - 2722161
Alignment:
Q  1 aaattcttaattgagtagttgtactt-cagtggttacaatctggaaaattagggtttatctgtttaggtcatgttttgagaata 83  Q
    ||||||||| |||||||||||||||| || |||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||    
T  2722078 aaattcttacttgagtagttgtacttgcaatggttacaatctagaaaactaggatttatctgtttaggttatgttttgagaata 2722161  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 22244605 - 22244699
Alignment:
Q  49 tagggttta-tctgtttaggtcatgttttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgtgacttaggcccta 142  Q
    ||||||||| ||||||||| |||||  || ||||| || |||| |||  |||||||||  ||  |||||||||||||||||||||||||||||||    
T  22244605 tagggtttaatctgtttagatcatgccttaagaatgctatcaaagtgagtatttatagctttttttgggcttgtatttccgtgacttaggcccta 22244699  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 43933718 - 43933585
Alignment:
Q  56 tatctgtttaggtcatgttttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgtgacttaggccctaggtcacgcctgtt 155  Q
    |||||||||||||||||  |||||||| |||||||||||| ||||||||| ||| ||||||||| |||| |||||||||  |||| | ||||| ||| ||    
T  43933718 tatctgtttaggtcatgccttgagaatgctctcaaggtgggtatttatagcctttcttgggcttttattcccgtgacttgagccccaagtcacacctttt 43933619  T
Q  156 gcgtttatgatgcgatctagatgcttctagaagt 189  Q
      ||||||    || |||||||||||||||||||    
T  43933618 atgtttattgcacgttctagatgcttctagaagt 43933585  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 40458178 - 40458094
Alignment:
Q  58 tctgtttaggtcatgttttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgtgacttaggcccta 142  Q
    |||||||||||||||  ||||||||  ||||||||||| ||||||||| |||  |||||||||||||  ||||||||| ||||||    
T  40458178 tctgtttaggtcatgccttgagaatgatctcaaggtgggtatttatagccttttttgggcttgtattcgcgtgacttacgcccta 40458094  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 34919789 - 34919850
Alignment:
Q  75 ttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgtgacttag 136  Q
    |||||||| |||||||||||| ||||||||| ||| ||| ||||||||||| ||||||||||    
T  34919789 ttgagaattctctcaaggtgggtatttatagcctttcttaggcttgtattttcgtgacttag 34919850  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 940650 - 940557
Alignment:
Q  49 tagggttta-tctgtttaggtcatgttttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgtgacttaggcccta 142  Q
    ||||||||| ||| ||| |||||||| ||||||||  |||||||| || ||||||||| ||| | ||||||||| |||||||||||||| |||||    
T  940650 tagggtttagtctcttttggtcatgtcttgagaatgatctcaaggggg-tatttatagccttgcgtgggcttgtttttccgtgacttagccccta 940557  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 41301762 - 41301844
Alignment:
Q  58 tctgtttaggtcatgttttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgtgacttaggccc 140  Q
    ||||||||||||||||  |||||||  |||||||  || ||||||||||||| |  ||||||||||||| |||||||| ||||    
T  41301762 tctgtttaggtcatgtcatgagaatgatctcaagaggggtatttatagtctttcacgggcttgtatttctgtgacttaagccc 41301844  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 14753837 - 14753772
Alignment:
Q  75 ttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgtgacttaggccc 140  Q
    |||||||| ||||||||  || ||||||||| | | | ||||||||||||||||||||||| ||||    
T  14753837 ttgagaatgctctcaagaggggtatttatagcccttcatgggcttgtatttccgtgacttaagccc 14753772  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 18507556 - 18507648
Alignment:
Q  49 tagggttta-tctgtttaggtcatgttttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgtgacttaggccc 140  Q
    ||||||||| ||||||| |||||||  |||||||  ||||||||  || ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  18507556 tagggtttagtctgttttggtcatgccttgagaaagctctcaagaagggtatttatagtctttcttaggcttgtatttccgtgacttaagccc 18507648  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 15968156 - 15968111
Alignment:
Q  62 tttaggtcatgttttgagaatactctcaaggtggatatttatagtc 107  Q
    ||||||||||| ||||||||| |||||||||| | |||||||||||    
T  15968156 tttaggtcatgctttgagaatgctctcaaggttggtatttatagtc 15968111  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 3776279 - 3776339
Alignment:
Q  34 tacaatctggaaaattagggttta-tctgtttaggtcatgttttgagaatactctcaaggt 93  Q
    |||||||| ||||||||||||||| ||| |||||||||||  ||||||||  |||||||||    
T  3776279 tacaatctagaaaattagggtttagtctatttaggtcatgccttgagaatgatctcaaggt 3776339  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 20805771 - 20805831
Alignment:
Q  77 gagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgtgacttagg 137  Q
    |||||| ||||||||| || |||||||| | || ||||||||||| |||| ||||||||||    
T  20805771 gagaatgctctcaaggggggtatttataatatttcttgggcttgtctttcagtgacttagg 20805831  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 47827585 - 47827533
Alignment:
Q  56 tatctgtttaggtcatgttttgagaatactctcaaggtggatatttatagtct 108  Q
    |||||||||||||||||  |||| ||| ||||||||  |||||||||||||||    
T  47827585 tatctgtttaggtcatgccttgataatgctctcaagagggatatttatagtct 47827533  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 31275015 - 31275093
Alignment:
Q  62 tttaggtcatgttttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttccgtgacttaggccc 140  Q
    |||| ||||||  |||||||| |||| || | || ||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  31275015 tttatgtcatgccttgagaatgctcttaacgagggtatttatagcctttcttgggcttgtatttccttgacttaagccc 31275093  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 43535535 - 43535470
Alignment:
Q  61 gtttaggtcatgttttgagaatactctcaaggtggatatttatagtcttccttgggcttgtatttc 126  Q
    |||||| |||||| |||||||| |||| | ||||| ||||||||| ||| |||| |||||||||||    
T  43535535 gtttagatcatgtcttgagaatgctcttatggtgggtatttatagcctttcttgagcttgtatttc 43535470  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 2041614 - 2041566
Alignment:
Q  45 aaattagggtttatctgtttaggtcatgttttgagaatactctcaaggt 93  Q
    ||||||||||| |||| ||||||||||| ||||||||| |||| |||||    
T  2041614 aaattagggttaatctctttaggtcatgctttgagaatgctcttaaggt 2041566  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 9871664 - 9871712
Alignment:
Q  57 atctgtttaggtcatgttttgagaatactctcaaggtggatatttatag 105  Q
    ||||||||||||||||  |||||||||||||||||  || |||||||||    
T  9871664 atctgtttaggtcatgccttgagaatactctcaagaggggtatttatag 9871712  T

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