View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8553_low_8 (Length: 368)
Name: NF8553_low_8
Description: NF8553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8553_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 43609316 - 43609637
Alignment:
| Q |
17 |
ataatacaattaatatattctgggatgactttgttatccaaagctgtgtttaacggaggaatgaaaacatctgtgtttgttttttatagacaactgattg |
116 |
Q |
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| T |
43609316 |
ataatacaattaatatattctgggatgactttgttatccaaagctgtgtttaacggaggaatgaaaacatatgtgtttgttttttatagacaactgattg |
43609415 |
T |
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| Q |
117 |
gagccattatcatggtccctttagctttaatatttgaaaggtaatgttgaaaaatatgctctctttttctttcctatagtttttacttgattttctctaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43609416 |
gagccattatcatggtccctttagctttaatatttgaaaggtaatgttgaaaaatatgttctgtttttctttcctatagtttttacttgattttctctaa |
43609515 |
T |
|
| Q |
217 |
cataatactttattatatgatccaggaaacaagccgtgccagtaacattctcatttatgaccatcttcaagatttttatgctttcattattggggtagta |
316 |
Q |
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| T |
43609516 |
cgtaatactttattatatggtccaggaaacaagccgtgccagtaacattctcatttatgaccatcttcaagatttttatgctttcattattggggtagta |
43609615 |
T |
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| Q |
317 |
cattattattccttaatctctg |
338 |
Q |
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| T |
43609616 |
cattattattccttaatctctg |
43609637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 43614631 - 43614923
Alignment:
| Q |
21 |
tacaattaatatattctgggatgactttgttatccaaagctgtgtttaacggaggaatgaaaacatctgtgtttgttttttatagacaactgattggagc |
120 |
Q |
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| T |
43614631 |
tacaattaatatattctgggatgactttgctgtccaaggccgcgtttaacggaggaatgaaaacatctgtgtttgttttttatagacagctgattggagc |
43614730 |
T |
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| Q |
121 |
cattatcatggtccctttagctttaatatttgaaaggtaatgttgaaaaatatgctctctttttctttcctatagtttttacttga-ttttctctaacat |
219 |
Q |
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| T |
43614731 |
cattatcatggtccctttatttttgatatttgaacggtaatgttgataaatatgttctgtttttctttcctatag-ttttacttgatttttccctgacat |
43614829 |
T |
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| Q |
220 |
aatactttattatatgatccaggaaacaagccgtgccagtaacattctcatttatgaccatcttcaagatttttatgctttcattattggggta |
313 |
Q |
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| T |
43614830 |
aatactttattatatggtccaggaaacaagccgtgccagcaatattctcatttataaccatcttcaagatttttatgctttcattattggggta |
43614923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 43602887 - 43603024
Alignment:
| Q |
23 |
caattaatatattctgggatgactttgttatccaaagctgtgtttaacggaggaatgaaaacatctgtgtttgttttttatagacaactgattggagcca |
122 |
Q |
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|||||||||||| | |||||||| ||| | ||||| || |||||||||| |||||||||||| ||||||||||| || || ||||||||||||||||||| |
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| T |
43602887 |
caattaatatatgccgggatgaccttgatgtccaaggccgtgtttaacgaaggaatgaaaacctctgtgtttgtcttctacagacaactgattggagcca |
43602986 |
T |
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| Q |
123 |
ttatcatggtccctttagctttaatatttgaaaggtaa |
160 |
Q |
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| T |
43602987 |
tgattatggtccctttggctttgatatttgaacggtaa |
43603024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 322
Target Start/End: Original strand, 43603120 - 43603212
Alignment:
| Q |
230 |
tatatgatccaggaaacaagccgtgccagtaacattctcatttatgaccatcttcaagatttttatgctttcattattggggtagtacattat |
322 |
Q |
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|||||| ||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
43603120 |
tatatggtccagcaaacaagccgtgccagtgaaattctcatttaagaccatcttcaagatttttatgctttcactatttgggtagtacattat |
43603212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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