View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8554_high_2 (Length: 527)
Name: NF8554_high_2
Description: NF8554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8554_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 20 - 516
Target Start/End: Original strand, 39494513 - 39495025
Alignment:
| Q |
20 |
gtcttttgactctgcctctttccctcgtccttcagattgtttctcttccgatttgaaatcctccatttggcttacaaaacccttgagattctgcattcga |
119 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39494513 |
gtcttttgactctggctctttccctcgtccttcaaattgtttctcttccgatttgaaatcctccatttggcttacaaaacccttgagattctgcattcga |
39494612 |
T |
|
| Q |
120 |
gctttaaattcctcctctttggattcaaattcctttactcggtcttcaagcagcttttcttttgtctggaactccttcaattgtccttcgaattgctcct |
219 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39494613 |
gctttgaattcctcctctttggattcaaattcctttactcggtcttcaagcagcttttcttttgtctggaactccttcaattgtcctttgaattgctcct |
39494712 |
T |
|
| Q |
220 |
tttctgattccagctccttcacctggacatcaagttggttttgttttgacttaaggtccttcacttggtc----------------tttgaatcaaactc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39494713 |
tttctgattccagctccttcacctggacatcaagttggttttgttttgacttaaggtccttcacttggtctttgaattgctcctcttttgaatcaaactc |
39494812 |
T |
|
| Q |
304 |
tttcaccagacctttgagttgcttctctttcaacactagctgtctcgctcgtccttcaagtttcctttcatttgattccaattcctttacctggctatca |
403 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| |||||||| |
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| T |
39494813 |
tttcactagacctttgagttgctcctctttcaacactagctgtctcgctcgtctttcaagttgcctttcatttgattccaattccttcacccggctatca |
39494912 |
T |
|
| Q |
404 |
aaatgctgcttttcataatcaagctcttttatttggccatgaaatttctccaacattggttcgaactccttcacttggcttttgagttgcttcttttttg |
503 |
Q |
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| T |
39494913 |
aaatgctgcttttcatattcaagctcttttatttggccatgaaatttctccaacattggttcaaactctttcacttggcttttgagttgcttcttttttg |
39495012 |
T |
|
| Q |
504 |
acttgagcttctt |
516 |
Q |
| |
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||||||||||||| |
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| T |
39495013 |
acttgagcttctt |
39495025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 39130627 - 39130479
Alignment:
| Q |
20 |
gtcttttgactctgcctctttccctcgtccttcagattgtttctcttccgatttgaaatcctccatttggcttacaaaacccttgagattctgcattcga |
119 |
Q |
| |
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||||| |||||||| |||||||||||||||| || ||||||||||||| || |||||| | ||||||||||||||||||| |||||| | |||||||||| |
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| T |
39130627 |
gtcttctgactctggctctttccctcgtcctgcaaattgtttctcttctgaattgaaaccatccatttggcttacaaaacgcttgagctcctgcattcga |
39130528 |
T |
|
| Q |
120 |
gctttaaattcctcctctttggattcaaattcctttactcggtcttcaa |
168 |
Q |
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| ||| ||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
39130527 |
gttttgaattcctcctctttggattcatgttcctttactcggtcttcaa |
39130479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 125 - 296
Target Start/End: Complemental strand, 39130480 - 39130309
Alignment:
| Q |
125 |
aaattcctcctctttggattcaaattcctttactcggtcttcaagcagcttttcttttgtctggaactccttcaattgtccttcgaattgctccttttct |
224 |
Q |
| |
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|||||||| |||| | |||| || ||||| ||| |||||||||||| ||||| ||||| |||||||||||||||| |||||||||||| || ||||||| |
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| T |
39130480 |
aaattccttctctattgattgaatctccttcacttggtcttcaagcaacttttgttttgactggaactccttcaatcgtccttcgaatttcttcttttct |
39130381 |
T |
|
| Q |
225 |
gattccagctccttcacctggacatcaagttggttttgttttgacttaaggtccttcacttggtctttgaat |
296 |
Q |
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||||| ||||||||||| ||||| |||||||||||| |||||||| |||| ||||||| || |||||||| |
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| T |
39130380 |
gattcgagctccttcacacggacaccaagttggttttcttttgactgaaggcccttcaccaggcctttgaat |
39130309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 39426829 - 39426952
Alignment:
| Q |
173 |
cttttcttttgtctggaactccttcaattgtccttcgaattgctccttttctgattccagctccttcacctggacatcaagttggttttgttttgactta |
272 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| ||||||| | |||||||||| | |||||||||| |||||||||||| ||||| |||||||| | |
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| T |
39426829 |
cttttcttttgactggagctccttcaattgtccttcaaattgcttcgtttctgattcgatctccttcacccggacatcaagttcgttttcttttgactga |
39426928 |
T |
|
| Q |
273 |
aggtccttcacttggtctttgaat |
296 |
Q |
| |
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||||||||||||||| |||||||| |
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| T |
39426929 |
aggtccttcacttggcctttgaat |
39426952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 39143662 - 39143536
Alignment:
| Q |
35 |
ctctttccctcgtccttcagattgtttctcttccgatttgaaatcctccatttggcttacaaaacccttgagattctgcattcgagctttaaattcctcc |
134 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||| ||||||| || ||| | ||| |
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| T |
39143662 |
ctctttccctcgtccttcaaaatgtttctcttctgatttcaaatcttccatttggcttacaaaacccttgagcttctgctttcgagcattgaatccatcc |
39143563 |
T |
|
| Q |
135 |
tctttggattcaaattcctttactcgg |
161 |
Q |
| |
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||||| ||||||||||||||| ||||| |
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| T |
39143562 |
tcttttgattcaaattcctttcctcgg |
39143536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 39426649 - 39426781
Alignment:
| Q |
35 |
ctctttccctcgtccttcagattgtttctcttccgatttgaaatcctccatttggcttacaaaacccttgagattctgcattcgagctttaaattcctcc |
134 |
Q |
| |
|
||||||||| |||||||| ||||| | ||||| || | |||||||||||||||||| |||||| |||||| | ||||||||||||||| | || |||| |
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| T |
39426649 |
ctctttcccctgtccttcaaattgtatttcttctgaataaaaatcctccatttggcttgcaaaacgcttgagttcctgcattcgagctttgagtttctcc |
39426748 |
T |
|
| Q |
135 |
tctttggattcaaattcctttactcggtcttca |
167 |
Q |
| |
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||| |||| | || ||||||| ||||||||||| |
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| T |
39426749 |
tctctggacttaagttcctttcctcggtcttca |
39426781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 39124638 - 39124557
Alignment:
| Q |
35 |
ctctttccctcgtccttcagattgtttctcttccgatttgaaatcctccatttggcttacaaaacccttgagattctgcatt |
116 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||| ||||| |||| |||||||||||||||||||| ||| || | ||||||| |
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| T |
39124638 |
ctctttccatcgtccttctaattgtttctgttctgatttaaaattctccatttggcttacaaaacgcttcaggtcctgcatt |
39124557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 39143513 - 39143435
Alignment:
| Q |
163 |
cttcaagcagcttttcttttgtctggaactccttcaattgtccttcgaattgctccttttctgattccagctccttcac |
241 |
Q |
| |
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|||||| |||||||||||||| ||| ||||||||||| |||||||||||| ||||||| |||| ||||||||||| |
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| T |
39143513 |
cttcaaccagcttttcttttgatcggatatccttcaattgctcttcgaattgcttcttttctaattcaagctccttcac |
39143435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 429
Target Start/End: Original strand, 39426987 - 39427101
Alignment:
| Q |
315 |
ctttgagttgcttctctttcaacactagctgtctcgctcgtccttcaagtttcctttcatttgattccaattcctttacctggctatcaaaatgctgctt |
414 |
Q |
| |
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|||| ||||||| |||||| ||| ||||||| ||| |||||||||| || ||| || ||||||||| ||||| | ||||||||||||||||| ||| |
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| T |
39426987 |
ctttcagttgctcctctttaaactctagctgcttcgaccgtccttcaaattgcctctctcttgattccatctccttcatctggctatcaaaatgcttctt |
39427086 |
T |
|
| Q |
415 |
ttcataatcaagctc |
429 |
Q |
| |
|
|||| | |||||||| |
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|
| T |
39427087 |
ttcagattcaagctc |
39427101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 39415120 - 39415170
Alignment:
| Q |
191 |
ctccttcaattgtccttcgaattgctccttttctgattccagctccttcac |
241 |
Q |
| |
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|||||||| ||| | |||||| |||| |||||||||||||||||||||||| |
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| T |
39415120 |
ctccttcagttggctttcgaaatgcttcttttctgattccagctccttcac |
39415170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 513
Target Start/End: Complemental strand, 39124184 - 39124115
Alignment:
| Q |
444 |
gaaatttctccaacattggttcgaactccttcacttggcttttgagttgcttcttttttgacttgagctt |
513 |
Q |
| |
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||||| |||||| | ||| || ||||||||||||||||| || ||| ||||||| |||| |||||||||| |
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| T |
39124184 |
gaaatctctccacctttgatttgaactccttcacttggccttcgaggtgcttctcttttaacttgagctt |
39124115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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