View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8554_high_4 (Length: 376)
Name: NF8554_high_4
Description: NF8554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8554_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 25 - 364
Target Start/End: Complemental strand, 830528 - 830189
Alignment:
| Q |
25 |
acaacaacaactactcccatggccagcaccgaagaatccctccgcaaatcccttcaatctcttccctctgctttttgctctgattctcgtgaagcatttc |
124 |
Q |
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| T |
830528 |
acaacaacaactactcccatggccagcaccgaagaatctctccgcaaatcccttcaatctcttctctctgcttccggctccgattctcgtgacgcatttc |
830429 |
T |
|
| Q |
125 |
gtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatggtcctcctgg |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
830428 |
gtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatggtccacctgg |
830329 |
T |
|
| Q |
225 |
ttgcgcggttaaatccaatgttctctctttctggcgtcaggtaacttttaaaagttactaactctgtcaatttgtatactatactctgattttgagtgaa |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
830328 |
ttgcgcggttaaatccaatgttctctctttctggcgtcaggtaacttttaaaagttactaactctgtcaatctgtatactatactctgattttgagtgaa |
830229 |
T |
|
| Q |
325 |
tggattatgcatgtgattggttccaacactttgggagtat |
364 |
Q |
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| T |
830228 |
tggattatgcatgtgattggttccaacactttgggagtat |
830189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 80 - 307
Target Start/End: Complemental strand, 836474 - 836247
Alignment:
| Q |
80 |
aatctcttccctctgctttttgctctgattctcgtgaagcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgtttaa |
179 |
Q |
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| T |
836474 |
aatctcttctctctgcttccggctccaattcccgtaaagcattccgtaaatcagttgttaacacacttaaacgccgtttcttttacaactcgtcgtttca |
836375 |
T |
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| Q |
180 |
aatttactgcggtgtcgctggtttttatgattatggtcctcctggttgcgcggttaaatccaatgttctctctttctggcgtcaggtaacttttaaaagt |
279 |
Q |
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| T |
836374 |
aatttacggcggcgaagccggtttttttgattatggacctcctggctccgctgttaaatacaatgttctctctttttggcgtcaggtaagttttaaaagt |
836275 |
T |
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| Q |
280 |
tactaactctgtcaatttgtatactata |
307 |
Q |
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|||||| |||| | ||| ||||||||| |
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| T |
836274 |
tactaaacctgtaattttttatactata |
836247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 49235046 - 49234952
Alignment:
| Q |
145 |
cttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatggtcctcctggttgcgcggttaaatc |
239 |
Q |
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| T |
49235046 |
cttgaacgccgtttgttttatattccttcgtttaagatttatcgcggtgttgctggtttttatgattatggtcctcctggttgtgctgttaaatc |
49234952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 266
Target Start/End: Complemental strand, 49825853 - 49825694
Alignment:
| Q |
106 |
gattctcgtgaagcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggttttt |
205 |
Q |
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||||| |||||||| ||||||||||| ||| || | |||||||| ||| || |||| ||| ||| |||||| ||||| | ||||| |||||||||| |
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| T |
49825853 |
gattcgcgtgaagcttttcgtcaatctgttaacaacgcgcttgaacgccgt-ttgtttatatttcgtagtttaagatttatcgtggtgttgctggttttt |
49825755 |
T |
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| Q |
206 |
atgattatggtcctcctggttgcgcggttaaatccaatgttctctctttctggcgtcaggt |
266 |
Q |
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| T |
49825754 |
atgattatggtcctcctgcttgtgccgttaaatctaatgtcctctccttttggcgtcaggt |
49825694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 941968 - 941835
Alignment:
| Q |
106 |
gattctcgtgaagcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggttttt |
205 |
Q |
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||||| |||||||||||||||||||| ||| ||||| |||||||| ||| | ||||| ||||| |||||||| ||||| | ||||| |||||||||| |
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| T |
941968 |
gattcgcgtgaagcatttcgtcaatctgttaacaatacgcttgaacgccgtttgttttatattccttcgtttaagatttatcgtggtgttgctggttttt |
941869 |
T |
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| Q |
206 |
atgattatggtcctcctggttgcgcggttaaatc |
239 |
Q |
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| T |
941868 |
atgattatggtcctcctggttgtgccgttaaatc |
941835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 50861624 - 50861745
Alignment:
| Q |
145 |
cttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgattatggtcctcctggttgcgcggttaaatccaatg |
244 |
Q |
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| T |
50861624 |
cttgaacgccgtttgttttatattccgtcgtttaagatttatcgcggtgttgctggttttaatgattatggtcctcctggttgtgccgttaaatctaacg |
50861723 |
T |
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| Q |
245 |
ttctctctttctggcgtcaggt |
266 |
Q |
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| T |
50861724 |
tcctctccttttggcgtcaggt |
50861745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 227
Target Start/End: Original strand, 47934430 - 47934461
Alignment:
| Q |
196 |
gctggtttttatgattatggtcctcctggttg |
227 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
47934430 |
gctggtttttatgattatggtcctcctggttg |
47934461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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