View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8554_high_6 (Length: 250)
Name: NF8554_high_6
Description: NF8554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8554_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 21777041 - 21776806
Alignment:
| Q |
2 |
agtaaagttgaaacatttttgtactatgatcattatcatgaggtaccctgcaaggattagtgtcatgtaaagaaaattatagaaagctttggaatcattc |
101 |
Q |
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| T |
21777041 |
agtaaagttgaaacatttttgtactatgatcattatcatgaggtaccctgcaaggattaaagtcatgtaaagaaaattatagaaagctttggaatcattc |
21776942 |
T |
|
| Q |
102 |
ggttgttcaactctcttgtgatgcttaataaccggcgtaaaaacaaaagttacaacagttggtaaccaagccataagcaaaattaaagattttgagtcat |
201 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21776941 |
ggttgttcaactctcatgtgatgcttaataaccggcgtaaaaacaaaagttacaacagttggtaaccaagccataagcaaaattaaagattttgagtcat |
21776842 |
T |
|
| Q |
202 |
ttccataaaaggcatagtatagttgagtgatgatag |
237 |
Q |
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||||||||||||| |||||||||||||| ||||||| |
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| T |
21776841 |
ttccataaaaggcgtagtatagttgagtaatgatag |
21776806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 19713359 - 19713594
Alignment:
| Q |
2 |
agtaaagttgaaacatttttgtactatgatcattatcatgaggtaccctgcaaggattagtgtcatgtaaagaaaattatagaaagctttggaatcattc |
101 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||| ||||||||||||||||| |
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| T |
19713359 |
agtaaagttgaaacatgtttgcactatgatcattatcatgaggaaccctgcaaggattaaagacatgtaaaggaaattataaaaagctttggaatcattt |
19713458 |
T |
|
| Q |
102 |
ggttgttcaactctcttgtgatgcttaataaccggcgtaaaaacaaaagttacaacagttggtaaccaagccataagcaaaattaaagattttgagtcat |
201 |
Q |
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||||||||| ||||||| || ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19713459 |
ggttgttcagctctcttatggtgcttaataactggcataaaaacaaaagttacagcagttggtaaccaagccataagcaaaattaaagatttagagtcat |
19713558 |
T |
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| Q |
202 |
ttccataaaaggcatagtatagttgagtgatgatag |
237 |
Q |
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||||||| |||||||||||||||||||| ||||||| |
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| T |
19713559 |
ttccatagaaggcatagtatagttgagtaatgatag |
19713594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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