View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8554_low_1 (Length: 540)
Name: NF8554_low_1
Description: NF8554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8554_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 269 - 533
Target Start/End: Original strand, 6915068 - 6915332
Alignment:
| Q |
269 |
taatatgatatgataaacaatgtgtttcaattttaattattaatatgttatatagcaaaaatagttagctatcaacaatgtgttaatctaaaagaataaa |
368 |
Q |
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| T |
6915068 |
taatatgatatgataaacaatgtgtttaaattttaattattaatatgttatatagcaaaaatagttagctatcaacaatgtgttaatctaaaagaataaa |
6915167 |
T |
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| Q |
369 |
acagtaaataacatattgttatagggtgcaccttgttataatatttgttgtctaaataattgaaataagtaccagaactacggttttggtaactgaatgt |
468 |
Q |
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| T |
6915168 |
acagtaaataacatattgttatagggtgcaccttgttatattatttgttgtttaaataattgaaataagtactagaactacggttttggtaactgaatgt |
6915267 |
T |
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| Q |
469 |
ctctcccaagccaaaccaacatacaaaacacctcccctatcatttcctaccattcatctctgctt |
533 |
Q |
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| T |
6915268 |
ctcttccaagccaaaccaacatacaaaacacctcccctatcatttcctaccattcatctctgctt |
6915332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 6913532 - 6913767
Alignment:
| Q |
20 |
ttaaccactctctttcatcatctcatgcagtttcagatctgacctctctgttgcgttgcactctttcatctatctattatcaggtaaactctcgtttatg |
119 |
Q |
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| T |
6913532 |
ttaaccactctctttcatcatctcatgcagtttcagatctgacctctctgttgcgttgcactctttcatctatctattatcaggtaaactctcgtttatg |
6913631 |
T |
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| Q |
120 |
ttataccatttctcttcaaacctttttatttcgtgtttataatggtagtaacaaagacggtgaatttttgaatatattattttatctgttttttacatat |
219 |
Q |
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| T |
6913632 |
tta--ccatttctctttaaacctttttatttcgtgtttataatggtagtaacaaagacggtgaatttttgaatatattattttatctgttttttacatat |
6913729 |
T |
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| Q |
220 |
gtgaactggagtccaaatttctgtacgttgttcatttt |
257 |
Q |
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| T |
6913730 |
gtgaactggagtccaaatttctttacgttgttcatttt |
6913767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 366 - 461
Target Start/End: Original strand, 45288536 - 45288631
Alignment:
| Q |
366 |
aaaacagtaaataacatattgttatagggtgcaccttgttataatatttgttgtctaaataa-ttgaaataagtaccagaactacggttttggtaac |
461 |
Q |
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| T |
45288536 |
aaaacagtgaataacatattgttattgggtgcaccttgttatagtatttgttgtttaaataatttgaaataagta-gagaagtacggttttggtaac |
45288631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 366 - 461
Target Start/End: Original strand, 12630726 - 12630820
Alignment:
| Q |
366 |
aaaacagtaaataacatattgttatagggtgcaccttgttataatatttgttgtctaaataattgaaataagtaccagaactacggttttggtaac |
461 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||| |
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| T |
12630726 |
aaaacagtgaataacatattgttattgggtgcaccttgttatagtatttgttgtttaaataattgaaataagta-gagaagtacggttttggtaac |
12630820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 366 - 461
Target Start/End: Complemental strand, 31608251 - 31608156
Alignment:
| Q |
366 |
aaaacagtaaataacatattgttatagggtgcaccttgttataatatttgttgtctaaataa-ttgaaataagtaccagaactacggttttggtaac |
461 |
Q |
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|||| ||| |||||||||||||||| ||||||||||||||||| |||||||||| ||||||| |||||||||||| |||| ||||||||||||||| |
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| T |
31608251 |
aaaaaagtgaataacatattgttattgggtgcaccttgttatagtatttgttgtttaaataatttgaaataagta-gagaagtacggttttggtaac |
31608156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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