View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8554_low_3 (Length: 418)
Name: NF8554_low_3
Description: NF8554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8554_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 47885856 - 47885464
Alignment:
| Q |
18 |
ccatctactacgcatccggagaatctcagaaagcgccgcagagtagattatcgtccttcgactccggatctacgtgaacgtgctctgatcggaagctgtt |
117 |
Q |
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| T |
47885856 |
ccatctactacgcatccggagaatctcagaaagcgccgcagagtagattatcgtccttcgactccggatctacgtgaacgtgctctgatcggaagctgtt |
47885757 |
T |
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| Q |
118 |
cttctccgatcaatgttcctgatttcccgcggggattacggggattgaacaatctcggaaacacttgtttcatgaattcggtgttgcaggctttgtttca |
217 |
Q |
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| T |
47885756 |
cttctccgatcaatgttcctgatttcccccggggattgcggggattgaacaatctcggaaacacttgtttcatgaattcggtgttgcaggctttgtttca |
47885657 |
T |
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| Q |
218 |
cacgccaccgttgagaaattacttcttgagtgataagcataatcgttacttttgccagaaaatgagcaatgccgatgatgccgcaaatggtgatgattct |
317 |
Q |
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| T |
47885656 |
cacgccaccgttgaggaattacttcctgagtgataagcataatcggtacttttgccagaaaatgagcaatgccgatgatgccgcaaatggtgatgattct |
47885557 |
T |
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| Q |
318 |
gccataacaacagcgaaaagaaacggagataacaatggaataaaaaatggaagattatgcttagcttgtgatatggatgctatgttctctgct |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885556 |
gccataacaacagcgaaaagaaacggagataacaatggaataaaaaatggaagattatgcttagcttgtgatatggatgctatgttctctgct |
47885464 |
T |
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