View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8554_low_4 (Length: 395)
Name: NF8554_low_4
Description: NF8554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8554_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 37249415 - 37249103
Alignment:
| Q |
18 |
agatgtttgatttctatgcatgagcttgaatgatgtatatgataaaaacaaaggagtctttgatgtttcttgatgattgacaaatatcaagagagtatga |
117 |
Q |
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| T |
37249415 |
agatgtttgatttctatgcatgagcttgaatgatgtagatgataaaaacaaaggagtctttgatgtttcttgatgattgacaaatatcaagagagtatga |
37249316 |
T |
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| Q |
118 |
ttatgctaaagacttatgctctttctccttgttgaacactttatagatgaggaccatccttgatgtggtaaataacaggagtttctagaggcaaaggtgg |
217 |
Q |
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| T |
37249315 |
ttatgctcaagacttatgctctttgtccttgttgaaca-tttatagatgaggaccatccttgatgtggtaaataacaggagtttctagaggcaaaggtgg |
37249217 |
T |
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| Q |
218 |
gaaggaaaagttaccaacacattagagtacttcactcttgttgaagccttttatcaaaatgttcttgcagtgttgataacgttctcagctgatgtatata |
317 |
Q |
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| T |
37249216 |
gaaggaaaagttaccaacacattagagtacttcactcttgttgaagccttttgtcaaaatgttcttgcagtgttgataacgttctcagctgatgtatata |
37249117 |
T |
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| Q |
318 |
ggacctaataaaca |
331 |
Q |
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| T |
37249116 |
ggacctaataaaca |
37249103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 37248908 - 37248872
Alignment:
| Q |
344 |
aaggacaactaataaacatatgcgtttttgtgatgtc |
380 |
Q |
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| T |
37248908 |
aaggacaactaataaacatatgcgtttttgtgatgtc |
37248872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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