View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8554_low_9 (Length: 217)
Name: NF8554_low_9
Description: NF8554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8554_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 30234693 - 30234888
Alignment:
| Q |
1 |
aatcaacaaacttttgatagctttccatgtagaagcactttccaaccacaacttgttttaataaaaataattgagctataagagatatatgtttctatct |
100 |
Q |
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| T |
30234693 |
aatcaacaaacttttgatagctt-ctatgtagaagcactttccaaccacaacttgt---aatagaaataattgagcattaagagatgtatgtttctatct |
30234788 |
T |
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| Q |
101 |
acaccgtcgaatcaaatatatattaaaaagttatttacattcacttagcacaaggcttccatattctaaaacaaatgtgtagcgcaacaaccacaagttt |
200 |
Q |
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| T |
30234789 |
ataccgtcgaatcaaatatatattaaaaagttatttacattcacttagcacaaggcttccatattctaaaacaaatgtgtagggcaacaaccacaggttt |
30234888 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 43509633 - 43509694
Alignment:
| Q |
137 |
acattcacttagcacaaggcttccatattctaaaacaaatgtgtagcgcaacaaccacaagt |
198 |
Q |
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| T |
43509633 |
acattcacttaccactaggcttccatcttctaaaacagatgtgtagcgcaacaaccataagt |
43509694 |
T |
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