View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8555_high_1 (Length: 778)

Name: NF8555_high_1
Description: NF8555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8555_high_1
NF8555_high_1
[»] chr5 (2 HSPs)
chr5 (19-557)||(12552303-12552841)
chr5 (558-761)||(12552026-12552231)
[»] chr4 (3 HSPs)
chr4 (409-481)||(42422618-42422690)
chr4 (450-490)||(50200020-50200060)
chr4 (448-490)||(27808566-27808608)
[»] chr2 (1 HSPs)
chr2 (450-516)||(13344872-13344938)


Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 19 - 557
Target Start/End: Complemental strand, 12552841 - 12552303
Alignment:
Q  19 gattcaccttttgaaatatcctgctttgaagactcactttgtccataagagtataagctagggttcatagcatattcttcaccaccactcaaacctaatg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12552841 gattcaccttttgaaatatcctgctttgaagactcactttgtccataagagtataaactagggttcatagcatattcttcaccaccactcaaacctaatg 12552742  T
Q  119 gctcgttagtttgaattgtgtttgttccattcaaaaacaaattgaatggattaaagctagggttaatattccctaaggggttataaggataatttcccat 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12552741 gctcattagtttgaattgtgtttgttccattcaaaaacaaattgaatggattaaagctagggttaatattccctaaggggttataaggataatttcccat 12552642  T
Q  219 gttaccaaatgaattatttgtgttcataatttgcaacatattttgcaacaattgcattttggctaggtgggtaatatctggttgtaaaccaagagggttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12552641 gttaccaaatgaattatttgtgttcataatttgcaacatattttgcaacaattgcattttggctaggtgggtaatatctggttgtaaaccaagagggttg 12552542  T
Q  319 ttgctaaaagtattgcctatatttgacatgccaagtaagtttgaaagactcatgaggtgattgtaatcagttcttggcttgtgagtttcaggatcaattc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12552541 ttgctaaaagtattgcctatatttgacatgccaagtaagtttgaaagactcatgaggtgattgtaatcagttcttggcttgtgagtttcaggatcaattc 12552442  T
Q  419 ccatcttgagaagctttttccttatgtttgtgttccaataattttttatctcgttatctgttcgtcctggtagatgagctgcaatcttcgaccacctaca 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12552441 ccatcttgagaagctttttccttatgtttgtgttccaataattttttatctcgttatctgttcgtcctggtagatgagctgcaatcttcgaccatctaca 12552342  T
Q  519 agacaaatnnnnnnnntcacattatttatagctctcgaa 557  Q
    ||||||||        |||||||||||||||||||||||    
T  12552341 agacaaataaaaaaaatcacattatttatagctctcgaa 12552303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 558 - 761
Target Start/End: Complemental strand, 12552231 - 12552026
Alignment:
Q  558 aaaattgacgtct--aacacttagtgatggaattagagacgaaattattttttccgtctgtgaaattccgtcgctatctttagagtgatttcaatatcat 655  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12552231 aaaattgacgtctctaacacttagtgatggaattagagacgaaattattttttccgtctctgaaattccgtcgctatctttagagtgatttcaatatcat 12552132  T
Q  656 tttctacataagaaaaaacaagttaagaaatatacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatctgtgaatttccctct 755  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12552131 tttctacataagaaaaaacaagataagaaatatacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatcagtgaatttccctct 12552032  T
Q  756 cttgat 761  Q
    ||||||    
T  12552031 cttgat 12552026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 42422618 - 42422690
Alignment:
Q  409 ggatcaattcccatcttgagaagctttttccttatgtttgtgttccaataattttttatctcgttatctgttc 481  Q
    ||||||||||||||||| |  ||||||||| | |||| ||||||||||| |||||| ||||| || |||||||    
T  42422618 ggatcaattcccatcttaatgagctttttcttgatgtgtgtgttccaatgatttttaatctcattgtctgttc 42422690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 50200020 - 50200060
Alignment:
Q  450 gttccaataattttttatctcgttatctgttcgtcctggta 490  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  50200020 gttccaataattttttatctcattatctgtacgtcctggta 50200060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 490
Target Start/End: Complemental strand, 27808608 - 27808566
Alignment:
Q  448 gtgttccaataattttttatctcgttatctgttcgtcctggta 490  Q
    |||||||||||||| |||||||| |||||||||| ||||||||    
T  27808608 gtgttccaataattctttatctcattatctgttcttcctggta 27808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 516
Target Start/End: Complemental strand, 13344938 - 13344872
Alignment:
Q  450 gttccaataattttttatctcgttatctgttcgtcctggtagatgagctgcaatcttcgaccaccta 516  Q
    ||||||||| || |||||||| ||||||||||||||||||| ||| | ||| |||  ||||||||||    
T  13344938 gttccaatagttctttatctcattatctgttcgtcctggtaaatgtgatgctatcaccgaccaccta 13344872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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