View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8555_high_10 (Length: 228)

Name: NF8555_high_10
Description: NF8555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8555_high_10
NF8555_high_10
[»] chr2 (24 HSPs)
chr2 (1-192)||(33594339-33594530)
chr2 (1-173)||(42543278-42543451)
chr2 (1-173)||(37481683-37481856)
chr2 (1-192)||(44437787-44437980)
chr2 (1-192)||(4598628-4598821)
chr2 (4-77)||(12489871-12489944)
chr2 (24-192)||(38434974-38435145)
chr2 (2-64)||(28960278-28960340)
chr2 (112-173)||(12026183-12026244)
chr2 (1-77)||(5759061-5759137)
chr2 (26-169)||(26784431-26784575)
chr2 (116-173)||(13240927-13240984)
chr2 (112-173)||(43832141-43832202)
chr2 (112-173)||(45077798-45077859)
chr2 (4-52)||(12470966-12471014)
chr2 (112-171)||(7825405-7825464)
chr2 (24-162)||(19235073-19235212)
chr2 (116-163)||(23714443-23714490)
chr2 (116-163)||(24102115-24102162)
chr2 (24-77)||(18188892-18188945)
chr2 (112-173)||(43260447-43260508)
chr2 (103-171)||(2610633-2610701)
chr2 (14-62)||(2906072-2906120)
chr2 (115-155)||(45436903-45436943)
[»] chr1 (21 HSPs)
chr1 (2-192)||(40419662-40419854)
chr1 (24-173)||(15577464-15577611)
chr1 (9-192)||(26016460-26016645)
chr1 (1-191)||(12261779-12261971)
chr1 (1-192)||(10272282-10272474)
chr1 (116-192)||(27637815-27637892)
chr1 (2-154)||(28528417-28528570)
chr1 (9-173)||(50771630-50771794)
chr1 (19-64)||(13578985-13579030)
chr1 (20-77)||(19969297-19969354)
chr1 (118-190)||(29807891-29807964)
chr1 (112-173)||(40416414-40416475)
chr1 (112-163)||(17640231-17640282)
chr1 (1-64)||(27637697-27637760)
chr1 (26-75)||(3818947-3818996)
chr1 (24-77)||(8203223-8203276)
chr1 (126-163)||(8343050-8343087)
chr1 (112-173)||(23791822-23791883)
chr1 (24-77)||(30834066-30834119)
chr1 (112-172)||(3819034-3819094)
chr1 (25-73)||(26299229-26299277)
[»] chr4 (27 HSPs)
chr4 (1-192)||(31897494-31897687)
chr4 (1-188)||(46372051-46372240)
chr4 (3-192)||(35555718-35555906)
chr4 (1-173)||(31961332-31961505)
chr4 (1-192)||(42285769-42285959)
chr4 (1-171)||(10209079-10209252)
chr4 (25-192)||(26356642-26356811)
chr4 (9-172)||(17900524-17900688)
chr4 (112-192)||(2589013-2589094)
chr4 (112-192)||(25257759-25257840)
chr4 (112-173)||(28497532-28497593)
chr4 (116-171)||(1427466-1427521)
chr4 (110-173)||(31339579-31339642)
chr4 (4-145)||(6478752-6478894)
chr4 (1-42)||(35622742-35622783)
chr4 (116-173)||(46715554-46715611)
chr4 (116-171)||(38903902-38903957)
chr4 (27-77)||(33225925-33225975)
chr4 (24-77)||(934520-934573)
chr4 (103-172)||(7092389-7092458)
chr4 (24-77)||(28351699-28351752)
chr4 (24-77)||(45569098-45569151)
chr4 (116-192)||(54470230-54470307)
chr4 (24-64)||(31043225-31043265)
chr4 (140-192)||(44360110-44360162)
chr4 (26-62)||(45184224-45184260)
chr4 (113-192)||(49738783-49738863)
[»] chr7 (25 HSPs)
chr7 (1-192)||(36514274-36514466)
chr7 (20-192)||(18605231-18605405)
chr7 (20-192)||(18637585-18637759)
chr7 (20-192)||(18651019-18651193)
chr7 (112-192)||(19262612-19262692)
chr7 (24-173)||(28628022-28628172)
chr7 (89-173)||(6420645-6420729)
chr7 (24-169)||(1569063-1569209)
chr7 (1-77)||(34745887-34745963)
chr7 (110-173)||(35713738-35713801)
chr7 (112-190)||(45558387-45558466)
chr7 (1-64)||(45558483-45558546)
chr7 (9-192)||(5335943-5336126)
chr7 (24-77)||(28562455-28562508)
chr7 (116-173)||(48202884-48202941)
chr7 (118-173)||(42187513-42187568)
chr7 (27-77)||(44401217-44401267)
chr7 (112-145)||(1740872-1740905)
chr7 (24-77)||(37976375-37976428)
chr7 (24-77)||(38135302-38135355)
chr7 (112-169)||(39812004-39812061)
chr7 (24-77)||(45601616-45601669)
chr7 (116-192)||(48736081-48736158)
chr7 (24-64)||(24549777-24549817)
chr7 (120-191)||(30914654-30914726)
[»] chr8 (23 HSPs)
chr8 (1-147)||(7531710-7531857)
chr8 (1-192)||(32043613-32043806)
chr8 (58-188)||(25985723-25985854)
chr8 (9-192)||(39953338-39953523)
chr8 (24-171)||(29520695-29520842)
chr8 (24-192)||(10079996-10080165)
chr8 (9-188)||(16351405-16351585)
chr8 (113-173)||(16917227-16917286)
chr8 (24-141)||(30198355-30198473)
chr8 (24-153)||(38178349-38178479)
chr8 (110-171)||(29645082-29645143)
chr8 (112-173)||(30559736-30559797)
chr8 (1-62)||(30812882-30812943)
chr8 (116-192)||(43732579-43732655)
chr8 (18-77)||(4011223-4011282)
chr8 (120-173)||(79086-79139)
chr8 (24-77)||(24399878-24399931)
chr8 (24-77)||(24739937-24739990)
chr8 (112-192)||(25985542-25985622)
chr8 (24-77)||(35643695-35643748)
chr8 (24-77)||(39967588-39967641)
chr8 (115-155)||(5908707-5908747)
chr8 (24-64)||(39388936-39388976)
[»] chr5 (26 HSPs)
chr5 (1-192)||(1525667-1525860)
chr5 (9-192)||(31635994-31636179)
chr5 (18-192)||(2712967-2713143)
chr5 (24-168)||(14667819-14667964)
chr5 (20-192)||(21915904-21916077)
chr5 (29-192)||(38578615-38578780)
chr5 (116-192)||(42199309-42199386)
chr5 (1-191)||(11002487-11002681)
chr5 (2-61)||(37065632-37065691)
chr5 (1-173)||(21952400-21952571)
chr5 (2-131)||(34734461-34734593)
chr5 (1-77)||(33667575-33667651)
chr5 (9-64)||(1935275-1935330)
chr5 (112-171)||(9917628-9917687)
chr5 (112-173)||(7359438-7359498)
chr5 (24-77)||(9917539-9917592)
chr5 (113-173)||(9235107-9235167)
chr5 (9-77)||(10082819-10082887)
chr5 (1-52)||(3442937-3442988)
chr5 (112-190)||(14749332-14749411)
chr5 (22-77)||(15369884-15369939)
chr5 (8-59)||(16134044-16134095)
chr5 (20-76)||(6367981-6368037)
chr5 (25-77)||(6889133-6889185)
chr5 (24-64)||(9235200-9235240)
chr5 (24-64)||(28186864-28186904)
[»] chr3 (20 HSPs)
chr3 (9-192)||(11581467-11581652)
chr3 (9-192)||(37351430-37351615)
chr3 (112-192)||(31454405-31454485)
chr3 (100-173)||(19737040-19737113)
chr3 (100-173)||(19757943-19758016)
chr3 (116-192)||(21200571-21200648)
chr3 (24-135)||(23534659-23534771)
chr3 (24-173)||(39600770-39600920)
chr3 (112-162)||(43308617-43308667)
chr3 (24-173)||(45289180-45289330)
chr3 (112-174)||(50249429-50249491)
chr3 (9-77)||(26990353-26990421)
chr3 (25-77)||(36820067-36820119)
chr3 (112-192)||(29374957-29375038)
chr3 (128-169)||(30344124-30344165)
chr3 (24-77)||(32052607-32052660)
chr3 (112-173)||(39235181-39235242)
chr3 (24-77)||(40116557-40116610)
chr3 (24-77)||(46431768-46431821)
chr3 (24-64)||(19162676-19162716)
[»] chr6 (8 HSPs)
chr6 (9-77)||(38903-38971)
chr6 (1-77)||(10617300-10617376)
chr6 (24-173)||(9593797-9593945)
chr6 (112-161)||(6907005-6907054)
chr6 (1-64)||(7513455-7513518)
chr6 (110-173)||(24665853-24665917)
chr6 (27-77)||(35199714-35199764)
chr6 (24-77)||(31831948-31832001)
[»] scaffold0018 (1 HSPs)
scaffold0018 (24-77)||(178509-178562)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 33594339 - 33594530
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacccaacctctagcgacc 100  Q
    ||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  33594339 ttctatccaaaaccatttctttctccaacttatttatctctgtatctttcataatagtttctcttataatttttctatatttaccctacctctagcgacc 33594438  T
Q  101 taactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccaccaagtcaagtttctaccatc 192  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  33594439 taactctccttcatctgatctattctccttactaccaaatccacatgtcttctctctacatgctcaaaccattaagtcaaatttctaccatc 33594530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 42543451 - 42543278
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgac 99  Q
    ||||||| |||| ||  ||||||||||||||||||||||||| ||| ||| ||||||||||||| ||| ||||||||  | || ||| |||||||| ||     
T  42543451 ttctatcaaaaagcacgtctttctccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgat 42543352  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    || |||| | | ||| |||||||||||||| |||||  |||||||| ||||||||| ||||||| |||||||||    
T  42543351 ctgactcccctccatttgatctactctcctaactacagaatccacaggtcttctctgtacatgcccaaaccacc 42543278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 37481683 - 37481856
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgac 99  Q
    ||||||| || ||||| | ||| ||||||||||||||| ||| ||||||| ||||||||||||| ||| |||||||   | | |  | ||||| || ||     
T  37481683 ttctatcaaataccatatttttatccaactcatttatcgctagatctttcttaatagtttctctaatagtttttcttggtcttcatctacctccagtgat 37481782  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||| | | |||||||||||||||||| ||||| |||| |||| ||||||||| |||||||||||||||||    
T  37481783 ctaactcccctccatctgatctactctcctaactacaaaattcacaagtcttctctctacatgctcaaaccacc 37481856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 44437787 - 44437980
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgac 99  Q
    ||||||| |||||||| | ||||||||||||||||||||||| ||| ||| ||||||||||||  ||| ||||||||  | || ||| |||||||| ||     
T  44437787 ttctatcaaaaaccatgtttttctccaactcatttatctctagatccttcttaatagtttctcatatagtttttctaggtctacccctacctctagtgat 44437886  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    || |||| | | ||||| |||||  ||||||| |||  |||||||| ||||||||| |||||||  |||||||| | ||| |||||||||||||    
T  44437887 ctgactcccctccatctcatctatactccttattacagaatccacaagtcttctctctacatgccgaaaccacctatgtctagtttctaccatc 44437980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 4598628 - 4598821
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgac 99  Q
    ||||||| ||| | || ||||||||||||||||||||||||| ||| ||| |||||| |||||  ||| ||||||||  |||||| | |||||||| |||    
T  4598628 ttctatcaaaatctatgtctttctccaactcatttatctctagatccttcctaatagcttctcgtatagtttttctaggtttaccactacctctagtgac 4598727  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    || |||| | | ||| | ||||  | | |||||||| |||| |||| ||||||| | || |||  ||||||||| ||||| |||||||||||||    
T  4598728 ctgactcccctccattttatctgttatacttactacaaaattcacaagtcttctttctatatgtccaaaccaccaaagtctagtttctaccatc 4598821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 12489871 - 12489944
Alignment:
Q  4 tatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    |||| |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||  ||| ||||||||    
T  12489871 tatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcatatagtttttcta 12489944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 38435145 - 38434974
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgacctaactctcattcatctgatcta 122  Q
    |||||| |||| ||||||| ||||||| |||||||||||||  || ||||||||  | |||| |  ||||||| || || ||| || | ||| |||||||    
T  38435145 tccaacacattaatctctagatctttcttaatagtttctcttgtagtttttctaggtctacctctgcctctagtgatctgactatcctccatatgatcta 38435046  T
Q  123 ctctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc--aagtcaagtttctaccatc 192  Q
    ||||||||||||    ||| ||| ||||||||||||||||| |||||||||  ||||| |||||| ||||||    
T  38435045 ctctccttactaaagcatctacaagtcttctctttacatgcccaaaccacccaaagtctagtttccaccatc 38434974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 28960278 - 28960340
Alignment:
Q  2 tctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctct 64  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||| ||| ||| |||||||||    
T  28960278 tctatcaaaaaccatatctttctccaactcatttatctctagatccttcttaacagtttctct 28960340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 12026183 - 12026244
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||||||||||||||||| ||| ||||| ||| ||||||||| |||||| ||||||||||    
T  12026183 catctgatctactctccttagtacaaaatctacaggtcttctctctacatggtcaaaccacc 12026244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5759061 - 5759137
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||| |||||||| ||||||||||||||||| ||||||| ||| ||| |  |||||||||| ||| ||||||||    
T  5759061 ttctatcaaaaaccatgtctttctccaactcattgatctctagatccttcttggtagtttctctaatagtttttcta 5759137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 26784431 - 26784575
Alignment:
Q  26 caactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacctaactctcattcatctgatctact 124  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||  | || | |  ||||||| ||  | |||  | | ||||| ||||||     
T  26784431 caactcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctttctctgcctctagtgatttgactaccctccatcttatctacc 26784530  T
Q  125 ctccttactaccaaatccacatgtcttctctttacatgctcaaac 169  Q
    ||||||||||| |||||||||| |||||||| || |||| |||||    
T  26784531 ctccttactacaaaatccacatatcttctctctaaatgcacaaac 26784575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 13240927 - 13240984
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||||||||||||||||   |||| ||||||||||||| ||||||| |||||||||    
T  13240927 tgatctactctccttactaaagaatctacatgtcttctctctacatgcccaaaccacc 13240984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 43832202 - 43832141
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||||||||||||||| |||||  ||||||||||| |||||| ||||||| |||| ||||    
T  43832202 catctgatctactctcctaactacataatccacatgttttctctgtacatgcccaaatcacc 43832141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 45077859 - 45077798
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||||||||||||||||||||| ||||| ||| || |||||| |||||||  ||||||||    
T  45077859 catctgatctactctccttactacaaaatctacaagttttctctctacatgccaaaaccacc 45077798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 12470966 - 12471014
Alignment:
Q  4 tatctaaaaccatttctttctccaactcatttatctctatatctttcat 52  Q
    |||| |||||||| ||||||||||||||||||||||||| ||| |||||    
T  12470966 tatcaaaaaccatgtctttctccaactcatttatctctagatccttcat 12471014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 7825464 - 7825405
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaacca 171  Q
    ||||| |||||||||||| ||||   |||| ||||||||||||| |||||||||||||||    
T  7825464 catctcatctactctcctgactatagaatctacatgtcttctctctacatgctcaaacca 7825405  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 19235073 - 19235212
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||| ||||| ||||||| |||||||  |||||||||||| ||| ||||||||  | | || | | |||||| ||  | |||| | | |||||||||||    
T  19235073 tccaaatcattaatctctagatctttctcaatagtttctcttatagtttttctaggtcttcctctatctctagtgatttgactcccctccatctgatcta 19235172  T
Q  123 ctctccttactaccaaatccacatgtcttctctttacatg 162  Q
    ||||| |||||||  ||||| || ||||||||||||||||    
T  19235173 ctctctttactacagaatccgcaggtcttctctttacatg 19235212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 23714443 - 23714490
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgc 163  Q
    ||||||||||||||||||||  |||||||| ||||||||| |||||||    
T  23714443 tgatctactctccttactacataatccacaagtcttctctctacatgc 23714490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 24102115 - 24102162
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgc 163  Q
    ||||||||||||||||||||  |||||||| ||||||||| |||||||    
T  24102115 tgatctactctccttactacataatccacaagtcttctctctacatgc 24102162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 18188945 - 18188892
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    |||| |||||| ||||||| |||||||  |||||||||||| ||||||||||||    
T  18188945 tccagctcattaatctctagatctttctgaatagtttctcttataatttttcta 18188892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 43260508 - 43260447
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||||||||||||||||||||   |||| ||| ||||| |||| |||||| |||||||||    
T  43260508 catctgatctactctccttactatagaatctacaagtcttttcttcacatgcccaaaccacc 43260447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 2610701 - 2610633
Alignment:
Q  103 actctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaacca 171  Q
    |||||||| ||| ||||||||||| ||||| || | ||| || |||||||||| ||||||| |||||||    
T  2610701 actctcatccatttgatctactcttcttaccacgacatctacgtgtcttctctctacatgcccaaacca 2610633  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 2906072 - 2906120
Alignment:
Q  14 catttctttctccaactcatttatctctatatctttcataatagtttct 62  Q
    ||||||||| ||||||||||| ||||||| || |||| |||||||||||    
T  2906072 catttctttatccaactcattgatctctacatttttcttaatagtttct 2906120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 45436943 - 45436903
Alignment:
Q  115 ctgatctactctccttactaccaaatccacatgtcttctct 155  Q
    ||||||||||||||||| ||| ||||| |||||||||||||    
T  45436943 ctgatctactctccttaatacaaaatctacatgtcttctct 45436903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 40419854 - 40419662
Alignment:
Q  2 tctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgacc 100  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||   |||  |||||||| | || ||| ||||||||  | |    
T  40419854 tctatcaaaaaccatgtctttctccaactcatttatctctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 40419755  T
Q  101 taactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccac-caagtcaagtttctaccatc 192  Q
    |||||| | | ||||||| ||||||||||| ||||  |||||||||||||||||| ||||||| ||||||||  ||||| |||| ||||||||    
T  40419754 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaaccacttaagtctagttactaccatc 40419662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 15577611 - 15577464
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| ||||||||||| ||| ||||||||||||| || |||||| || || | || | |||||||| ||  | ||| ||   |||||||||||    
T  15577611 tccaactcattaatctctatatccttcttaatagtttctcttattatttttttagatcttcctctacctctagtgatgtgactatc---catctgatcta 15577515  T
Q  123 ctctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||||||||||  ||||| |||||||||||| |||||||||||||||||    
T  15577514 ctctccttactacagaatccgcatgtcttctctatacatgctcaaaccacc 15577464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 26016645 - 26016460
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttac-ccaacctctagcgacctaactct 107  Q
    |||||||| | |||||| |||||||||||||||| ||| ||| ||||||||||||| ||| ||||||||  | ||| |  |||||||| || || ||||     
T  26016645 aaaaccatgtttttctctaactcatttatctctagatcattcctaatagtttctcttatagtttttctaggtctactcttacctctagtgatctgactcc 26016546  T
Q  108 cattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    | ||||||||||||| ||||||| ||||  ||| || | ||||||| | ||||| | ||||||||| || || |||||||||||||    
T  26016545 ccttcatctgatctaatctccttgctacagaatgcataggtcttctttctacatacccaaaccacctaaatctagtttctaccatc 26016460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 12261779 - 12261971
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgac 99  Q
    ||||||| |||||||| ||||||||||||| ||| ||| |||  |  ||| || |||||||||| ||| ||||||||  | |||||| |||||||| ||     
T  12261779 ttctatcaaaaaccatgtctttctccaactaattaatccctaatttcttcttactagtttctcttatagtttttctaggtcttaccccacctctagtgat 12261878  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccat 191  Q
     | |||||| | |||| ||||||| ||| ||||||| ||||||| | |||||| ||  |||||| ||||||||| ||||| ||||| ||||||    
T  12261879 ttgactctcctccatcagatctaccctcattactacaaaatccaaaagtcttccctccacatgcccaaaccacctaagtctagtttataccat 12261971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 10272474 - 10272282
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgac 99  Q
    ||||||| |||||||  | ||||||| ||| ||| || |||| ||| ||| ||||||||||||| |||| |||||||  | || ||| |||||||| ||     
T  10272474 ttctatcaaaaaccaggtgtttctcctacttattaatttctagatccttcttaatagtttctcttataagttttctaggtcttcccctacctctagtgat 10272375  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccac-caagtcaagtttctaccatc 192  Q
     | |||| ||| |||||||||| |||||||| ||| | |||||||| ||||||||| |||||||  |||||||   |||| |||||||||||||    
T  10272374 ttgactcccatccatctgatctcctctccttccta-cgaatccacaggtcttctctctacatgccaaaaccactttagtctagtttctaccatc 10272282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 27637815 - 27637892
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |||||||||||||||||||| | ||||||||||||| ||| ||||||| |||| |||| ||||| |||||||| ||||    
T  27637815 tgatctactctccttactacaacatccacatgtcttttctctacatgcccaaaacacctaagtctagtttctatcatc 27637892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 28528570 - 28528417
Alignment:
Q  2 tctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacc 100  Q
    |||||| |||||||| ||||||||||||||||| ||||||| ||| ||| ||||||||||| | ||| ||||| ||  | || ||| || ||||| ||      
T  28528570 tctatcaaaaaccatgtctttctccaactcattaatctctagatccttcttaatagtttctgttatagtttttttaggtcttcccctacttctagggatt 28528471  T
Q  101 taactctcattcatctgatctactctccttactaccaaatccacatgtcttctc 154  Q
    | |||| | | ||| ||||||||| ||||||||||  |||||||| ||||||||    
T  28528470 tgactcccctccatttgatctactgtccttactacagaatccacaagtcttctc 28528417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 50771630 - 50771794
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacctaactct 107  Q
    |||||||| ||||||||||||| ||| |||||||  || ||| |||||||||| || ||| ||||||||  | || ||| ||||||||  |  | ||||     
T  50771630 aaaaccatgtctttctccaacttattaatctctaggtccttcttaatagtttcgcttatagtttttctaggtcttcccctacctctagtcatttgactcc 50771729  T
Q  108 cattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    | | |||||||||||||||||||||||| |||||||   ||||||||| |||| || |||||||||    
T  50771730 cctccatctgatctactctccttactacaaaatccatgggtcttctctctaca-gcccaaaccacc 50771794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 13578985 - 13579030
Alignment:
Q  19 ctttctccaactcatttatctctatatctttcataatagtttctct 64  Q
    ||||||| |||||||||||||||| || ||||||||||||||||||    
T  13578985 ctttctcaaactcatttatctctaaatatttcataatagtttctct 13579030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 19969297 - 19969354
Alignment:
Q  20 tttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||||||| ||||||| ||||||  ||||||||||||| ||| ||||||||    
T  19969297 tttctccaactcattaatctctagatctttgttaatagtttctcttatagtttttcta 19969354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 29807964 - 29807891
Alignment:
Q  118 atctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccac-caagtcaagtttctacca 190  Q
    |||||||||| |||||||  |||||||||||||||||| ||||||| |||| |||  ||||| |||||||||||    
T  29807964 atctactctctttactacataatccacatgtcttctctctacatgcccaaatcacgtaagtctagtttctacca 29807891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 40416475 - 40416414
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||||||||||||||||||||| ||||| |||  |||||||| |||||||  ||||||||    
T  40416475 catctgatctactctccttactacaaaatctacagttcttctctctacatgcctaaaccacc 40416414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 17640231 - 17640282
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgc 163  Q
    |||||||||||||||||||||||| ||||||||  |||| |||| |||||||    
T  17640231 catctgatctactctccttactacaaaatccacgggtctcctctctacatgc 17640282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27637697 - 27637760
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctct 64  Q
    ||||||| |||||||| ||||||||||||||||| ||| ||| ||| ||| | |||||||||||    
T  27637697 ttctatcaaaaaccatgtctttctccaactcattgatcactagatccttcttgatagtttctct 27637760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 3818947 - 3818996
Alignment:
Q  26 caactcatttatctctatatctttcataatagtttctctcataatttttc 75  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||| ||||||    
T  3818947 caactcattaatctctaaatctttcttaatagtttctcttatagtttttc 3818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 8203223 - 8203276
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||| ||||||  ||||||||||||| ||| ||||||||    
T  8203223 tccaactcattaatctctagatcttttttaatagtttctcttatagtttttcta 8203276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 8343050 - 8343087
Alignment:
Q  126 tccttactaccaaatccacatgtcttctctttacatgc 163  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  8343050 tccttactaccaaatccacaggtcttctctctacatgc 8343087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 23791822 - 23791883
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||| |||||| || || |||||  |||||||||||||||||| ||||||| |||||||||    
T  23791822 catctcatctacccttctaactacataatccacatgtcttctctctacatgcacaaaccacc 23791883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 30834066 - 30834119
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||| ||||||| ||||||||||||| |||  |||||||    
T  30834066 tccaactcattaatctctagatctttcgtaatagtttctcttatagcttttcta 30834119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 3819034 - 3819094
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccac 172  Q
    |||||||||||||||| ||||||   |||||||| ||||||| | ||||||| ||||||||    
T  3819034 catctgatctactctctttactagagaatccacaagtcttctttctacatgcccaaaccac 3819094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 26299277 - 26299229
Alignment:
Q  25 ccaactcatttatctctatatctttcataatagtttctctcataatttt 73  Q
    |||||||||| | ||||| ||||||||||||||||||||| ||| ||||    
T  26299277 ccaactcattaacctctaaatctttcataatagtttctcttatagtttt 26299229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 31897494 - 31897687
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgac 99  Q
    ||||||| | |||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||| ||| ||||||||  | || ||| |||||||| ||     
T  31897494 ttctatcaacaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgat 31897593  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaacca-ccaagtcaagtttctaccatc 192  Q
    || |||| | | ||||| ||| |||||||| |||||  |||||||| |||| |||| ||||||| ||||||| ||||||| |||||||||||||    
T  31897594 ctgactcccctccatctaatcgactctcctaactacagaatccacaggtctgctctctacatgcgcaaaccacccaagtctagtttctaccatc 31897687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 46372240 - 46372051
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgac 99  Q
    ||||||| |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||| ||| ||||||||  | || ||| |||||||| ||     
T  46372240 ttctatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgat 46372141  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctac 188  Q
    ||  ||| | |  ||||||||| |||| |||| |||  |||||||||||||||||| ||||||| ||||||||| ||||| |||||||||    
T  46372140 ctggctcccctctatctgatctgctcttcttagtacagaatccacatgtcttctctctacatgcacaaaccacctaagtctagtttctac 46372051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 35555718 - 35555906
Alignment:
Q  3 ctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttaccca-acctctagcgacct 101  Q
    ||||| |||||||| ||||||||||||||||||||||||| |    || ||||||||||||| ||| ||||||||  | |||||  |||||||| ||||     
T  35555718 ctatcaaaaaccatgtctttctccaactcatttatctctagac---tcttaatagtttctcttatagtttttctaggtctacccctacctctagtgaccc 35555814  T
Q  102 aactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    ||||||| |  |||| |||||||||||| |||||  |||||||| ||||||||| || |||| ||||||||| ||||| |||||||||||||    
T  35555815 aactctcctctatctaatctactctcctaactacagaatccacaggtcttctctctaaatgcccaaaccacctaagtctagtttctaccatc 35555906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 31961332 - 31961505
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgac 99  Q
    ||||||| | |||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||| ||||||||  | || ||| |||||||| ||     
T  31961332 ttctatcaacaaccatgtctttctccaactcatttatctctagatctttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgat 31961431  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
     | ||||   | ||||| ||| |||||||| |||||  |||||||| ||||||||| ||||||| |||||||||    
T  31961432 ttgactcctctccatctaatccactctcctaactacagaatccacaagtcttctctctacatgcccaaaccacc 31961505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 42285769 - 42285959
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgac 99  Q
    ||||||| |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||  ||| |||  |||||||  | || ||| |||||||| ||     
T  42285769 ttctatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtt--tcttatagcttttctaggtctacccccacctctagtgat 42285866  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    || |||| | | || ||||||| |||| || |||||  |||||||| ||||||||| ||||||| ||||||||| ||||| |||||||||||||    
T  42285867 ctgactcccctcca-ctgatctgctcttctgactacagaatccacaggtcttctctatacatgcccaaaccacctaagtctagtttctaccatc 42285959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 10209252 - 10209079
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattt---acccaacctctagcg 97  Q
    ||||||| |||||||| ||||||||||||||||| ||||||| ||| ||| ||||||||||||| ||| ||||||||  | |    ||| ||| ||||      
T  10209252 ttctatcaaaaaccatgtctttctccaactcattaatctctagatccttcttaatagtttctcttatagtttttctaggtctccccccctaccactagtc 10209153  T
Q  98 acctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaacca 171  Q
    |  | |||||| | |||||||||||||||||||||||  |||| |||| ||||||||  ||||||| |||||||    
T  10209152 atatgactctcctccatctgatctactctccttactaaaaaattcacaggtcttctcgctacatgcccaaacca 10209079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 26356811 - 26356642
Alignment:
Q  25 ccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacctaactctcattcatctgatctac 123  Q
    |||||||||| ||||||| ||| ||||||| ||||||||| ||| ||||||||  | || ||| |||||||| ||  | |||| | | |||| |||||||    
T  26356811 ccaactcattaatctctagatccttcataacagtttctcttatagtttttctaggtcttcccctacctctagtgatttgactcccctccatccgatctac 26356712  T
Q  124 tctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |||||||||||| | | ||||||||||||||| ||  ||| ||||||||| ||||| | |||||||||||    
T  26356711 tctccttactacaatacccacatgtcttctctctaagtgcccaaaccacctaagtctattttctaccatc 26356642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 17900688 - 17900524
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgacctaactct 107  Q
    |||||||| ||||||| ||||||||||||||||||||||||| | ||||||||||| | | |||||||| |   | ||| |||||||  || || ||||     
T  17900688 aaaaccatgtctttctacaactcatttatctctatatctttcctgatagtttctcttaaagtttttctacagacacccctacctctaatgatctgactcc 17900589  T
Q  108 cattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccac 172  Q
      | ||||||||||||||||||  ||||  |||||||| ||||||||| ||| ||| ||||||||    
T  17900588 tctccatctgatctactctcctatctacataatccacaggtcttctctctacgtgcccaaaccac 17900524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 2589094 - 2589013
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |||||||||||||||||| |||||  |||||||| || |||||| |||||||  |||||||| ||||| |||||||||||||    
T  2589094 catctgatctactctcctaactacagaatccacaagttttctctctacatgcctaaaccacctaagtctagtttctaccatc 2589013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 25257759 - 25257840
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    ||||||||||||||||||||| ||   || |||| ||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  25257759 catctgatctactctccttacaacagcattcacaggtcttctctctacatgctcaaaccacctaagtctagcttctaccatc 25257840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 28497593 - 28497532
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||||||||||||||||||  |||| ||| ||||||||| ||||||| |||||||||    
T  28497593 catctgatctactctccttactacataatctacaagtcttctctctacatgcccaaaccacc 28497532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 1427466 - 1427521
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaacca 171  Q
    ||||||||||||||||| || ||||||||| ||| ||||| |||||||||||||||    
T  1427466 tgatctactctccttaccacaaaatccacaggtcctctctctacatgctcaaacca 1427521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 31339642 - 31339579
Alignment:
Q  110 ttcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||| ||||||||| ||||||||||  |||| ||| ||||||||| |||||||||||||||||    
T  31339642 ttcatttgatctactatccttactacataatctacaagtcttctctctacatgctcaaaccacc 31339579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 6478752 - 6478894
Alignment:
Q  4 tatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgaccta 102  Q
    |||| |||||||| |||||||| |||||||||| ||||| ||| ||| |||||||||||||  |  ||||||||  | || ||| | |||| | || |||    
T  6478752 tatcaaaaaccatgtctttctctaactcatttacctctagatccttcctaatagtttctcttgtcgtttttctaggtctacccctagctctggtgatcta 6478851  T
Q  103 actctcattcatctgatctactctccttactaccaaatccaca 145  Q
    |||| | | |||||||||||||||||| |||||  ||||||||    
T  6478852 actcccttccatctgatctactctcctaactacataatccaca 6478894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35622742 - 35622783
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctcta 42  Q
    ||||||| |||||||| |||||||||||||||||||||||||    
T  35622742 ttctatcaaaaaccatgtctttctccaactcatttatctcta 35622783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 46715554 - 46715611
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||||||||| ||||  |||||||||||||||||| ||||||| || ||||||    
T  46715554 tgatctactctccttgctacataatccacatgtcttctctctacatgcccacaccacc 46715611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 38903902 - 38903957
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaacca 171  Q
    ||||||||||||| |||||| ||||| ||| |||||||||  ||||||||||||||    
T  38903902 tgatctactctccatactacaaaatctacaagtcttctctccacatgctcaaacca 38903957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 33225925 - 33225975
Alignment:
Q  27 aactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||| || ||||||| ||||||| ||||||||||||| ||||||||||||    
T  33225925 aactcgttaatctctaaatctttcttaatagtttctcttataatttttcta 33225975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 934520 - 934573
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||| | ||||| ||||||||||||| ||| ||||||||    
T  934520 tccaactcattaatctctagaactttcttaatagtttctctaatagtttttcta 934573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 7092389 - 7092458
Alignment:
Q  103 actctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccac 172  Q
    |||||||| ||||||||||||||| | |||||  | ||| ||||||||||||| || |||| ||||||||    
T  7092389 actctcatccatctgatctactcttcatactataacatctacatgtcttctctctatatgcccaaaccac 7092458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 28351752 - 28351699
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||| | ||||||| ||||||| ||||||||||||| ||| ||||||||    
T  28351752 tccaactcaataatctctaaatctttcgtaatagtttctcttatagtttttcta 28351699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 45569098 - 45569151
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||| || |||| ||||||||||||| ||||| ||||||    
T  45569098 tccaactcattgatctctagatttttcttaatagtttctcttataatgtttcta 45569151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 54470307 - 54470230
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccac-caagtcaagtttctaccatc 192  Q
    |||| |||||||||||||||  |||  ||||||||||||| ||||||| ||||||||  ||||| |||||| ||||||    
T  54470307 tgatttactctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatc 54470230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 31043265 - 31043225
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctct 64  Q
    ||||||||||| ||||||| ||||||| |||||||||||||    
T  31043265 tccaactcattaatctctaaatctttcctaatagtttctct 31043225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 44360162 - 44360110
Alignment:
Q  140 tccacatgtcttctctttacatgctcaaaccaccaagtcaagtttctaccatc 192  Q
    |||||||||||||||| ||||||| ||||| ||| | || |||||||||||||    
T  44360162 tccacatgtcttctctctacatgcccaaacaacctaatctagtttctaccatc 44360110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 45184224 - 45184260
Alignment:
Q  26 caactcatttatctctatatctttcataatagtttct 62  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  45184224 caactcattaatctctttatctttcataatagtttct 45184260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 49738783 - 49738863
Alignment:
Q  113 atctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    ||||||| ||||||||||| ||| ||||| |   |||||||||||||| ||||||| |||| ||| | |||||||||||||    
T  49738783 atctgatttactctccttagtacaaaatctatgggtcttctctttacacgctcaaatcacctaagccgagtttctaccatc 49738863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 36514274 - 36514466
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacccaacctctagcgacc 100  Q
    ||||||| |||||||| ||||||||||| ||||||||||||| ||| ||| | |||| |||||| ||  ||||||||| | | ||| |||||||| |||     
T  36514274 ttctatcaaaaaccatgtctttctccaattcatttatctctagatccttcttgatagcttctcttatgttttttctatgtctcccctacctctagtgact 36514373  T
Q  101 taactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    | |||| | |  |||||||||||||||| ||||||  |||||||| ||| ||||| ||||||| ||||||||| ||||| |||||||||||||    
T  36514374 tgactcccctctatctgatctactctccatactacagaatccacaagtcgtctctctacatgcccaaaccacctaagtctagtttctaccatc 36514466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 18605231 - 18605405
Alignment:
Q  20 tttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttaccca-acctctagcgacctaactctcattcatctga 118  Q
    ||||| |||||||||||| |||| ||| |||||||||||||||||  || ||||||||  | |||||| || ||||| ||  | |||||| |  ||||||    
T  18605231 tttcttcaactcatttatttctaaatccttcataatagtttctcttgtagtttttctaggtctacccatacatctagtgatttgactctcctcgatctga 18605330  T
Q  119 tctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |||| |||||| ||||   |||| ||||||||||||| ||||||||||||||||| ||||  |||||||||||||    
T  18605331 tctaatctcctaactatataatctacatgtcttctctctacatgctcaaaccacctaagtttagtttctaccatc 18605405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 18637759 - 18637585
Alignment:
Q  20 tttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttaccca-acctctagcgacctaactctcattcatctga 118  Q
    ||||| |||||||||||| |||| ||| |||||||||||||||||  || ||||||||  | |||||| || ||||| ||  | |||||| |  ||||||    
T  18637759 tttcttcaactcatttatttctaaatccttcataatagtttctcttgtattttttctaggtctacccatacatctagtgatttgactctcctcgatctga 18637660  T
Q  119 tctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |||| |||||| ||||   |||| ||||||||||||| ||||||||||||||||| ||||  |||||||||||||    
T  18637659 tctaatctcctaactatataatctacatgtcttctctctacatgctcaaaccacctaagtttagtttctaccatc 18637585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 18651193 - 18651019
Alignment:
Q  20 tttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttaccca-acctctagcgacctaactctcattcatctga 118  Q
    ||||| |||||||||||| |||| ||| |||||||||||||||||  || ||||||||  | |||||| || ||||| ||  | |||||| |  ||||||    
T  18651193 tttcttcaactcatttatttctaaatccttcataatagtttctcttgtattttttctaggtctacccatacatctagtgatttgactctcctcgatctga 18651094  T
Q  119 tctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |||| |||||| ||||   |||| ||||||||||||| ||||||||||||||||| ||||  |||||||||||||    
T  18651093 tctaatctcctaactatataatctacatgtcttctctctacatgctcaaaccacctaagtttagtttctaccatc 18651019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 19262612 - 19262692
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    ||||||||||||||| |||||||| ||||| ||| ||||||||| ||||||||||||||||| ||| |||||||||||||||    
T  19262612 catctgatctactcttcttactac-aaatctacaggtcttctctctacatgctcaaaccacctaagccaagtttctaccatc 19262692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 28628022 - 28628172
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| ||||||| ||||||| ||||||||||||| ||| ||||||||  | || | | |||||| | ||  | ||| || | |||| ||||||    
T  28628022 tccaactcattaatctctaaatctttcctaatagtttctcttatagtttttctaggtcttcctctacctcttgtgatttgactatcctccatcggatcta 28628121  T
Q  123 ctctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||||||||||  |||| ||| || |||||||||||||| |||||||||    
T  28628122 ctctccttactacataatctacaggttttctctttacatgcccaaaccacc 28628172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 6420645 - 6420729
Alignment:
Q  89 cctctagcgacctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||| || || ||| |||||||||||||||||||||||||||||   ||| ||| ||||||||| ||||||| |||||||||    
T  6420645 cctctagtgatctgactatcattcatctgatctactctccttactacagtatctacaagtcttctctctacatgcccaaaccacc 6420729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 1569209 - 1569063
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| ||||||| ||||||| |||||||| |||| ||| ||||||||    |||| |  |||||||| | || ||| || | |||||||||||    
T  1569209 tccaactcattaatctctagatctttcttaatagttactcttatagtttttctaggactacctctgcctctagcaatctgactatcctccatctgatcta 1569110  T
Q  123 ctctccttactaccaaatccacatgtcttctctttacatgctcaaac 169  Q
    |||||||| |||| | ||| ||| | ||||||| |||||||||||||    
T  1569109 ctctcctttctacaacatctacacgacttctctctacatgctcaaac 1569063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34745963 - 34745887
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||| |||||||| | |||||||||||||||||||| || ||| ||| ||||||||||||| ||  ||||||||    
T  34745963 ttctatcaaaaaccatgtttttctccaactcatttatctttagatccttcctaatagtttctcttatggtttttcta 34745887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 35713801 - 35713738
Alignment:
Q  110 ttcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||| ||||||||||||||||||| ||||  ||| ||||||||| ||||||| |||||||||    
T  35713801 ttcatcagatctactctccttactacaaaatgtacaagtcttctctctacatgcccaaaccacc 35713738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 45558466 - 45558387
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctacca 190  Q
    |||||||||||||||||| |||||  |||||||| || |||||| ||| ||| ||||||||| ||||| |||||||||||    
T  45558466 catctgatctactctcctaactacagaatccacaggtattctctctacgtgcacaaaccacctaagtcgagtttctacca 45558387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 45558546 - 45558483
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctct 64  Q
    ||||||| |||||||| |||||| |||||||||||||||||| ||| |||  ||||||||||||    
T  45558546 ttctatcaaaaaccatgtctttcaccaactcatttatctctagatccttcccaatagtttctct 45558483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 5336126 - 5335943
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta-tatttacccaacctctagcgacctaactct 107  Q
    |||||||| ||||||||||||||||| ||||||| ||| ||| ||||||  | ||||||| |||||| |   ||| ||| ||||| || ||  | ||||     
T  5336126 aaaaccatgtctttctccaactcattaatctctagatcattcttaatag--tatctcatagtttttcaaggttttcccctacctcgagtgatttgactcc 5336029  T
Q  108 cattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    | | ||||| |||||||||||| |||||  ||||||||  |||||||| || |||| ||||||||| ||||| |||||| ||||||    
T  5336028 cctccatctaatctactctcctaactacagaatccacagttcttctctctatatgcccaaaccacctaagtctagtttcgaccatc 5335943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 28562455 - 28562508
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    |||||||| || ||||||| ||||||||||||||||||||| ||| ||||||||    
T  28562455 tccaactcgttaatctctaaatctttcataatagtttctcttatattttttcta 28562508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 48202884 - 48202941
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||||||||||||||  |||| ||| ||||||||| ||||||| |||||||||    
T  48202884 tgatctactctccttactacagaatctacaagtcttctctctacatgcgcaaaccacc 48202941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 42187568 - 42187513
Alignment:
Q  118 atctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||||||||||||  |||| ||| | ||||||||||||||| |||||||||    
T  42187568 atctactctccttactacataatctacaggccttctctttacatgcccaaaccacc 42187513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 44401217 - 44401267
Alignment:
Q  27 aactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||| || ||||||| ||||||| ||||||||||||| ||||||||||||    
T  44401217 aactcgttaatctctaaatctttcttaatagtttctcttataatttttcta 44401267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 1740905 - 1740872
Alignment:
Q  112 catctgatctactctccttactaccaaatccaca 145  Q
    |||||||||||||||||||||||| |||||||||    
T  1740905 catctgatctactctccttactacaaaatccaca 1740872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 37976428 - 37976375
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||| |||||||||| ||||||| || ||| ||||||||    
T  37976428 tccaactcattaatctctaaatctttcatattagtttcacttatagtttttcta 37976375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 38135302 - 38135355
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||| ||||||  ||||||||||||| ||| ||||||||    
T  38135302 tccaactcattaatctctaaatcttttttaatagtttctcttatactttttcta 38135355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 39812061 - 39812004
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaac 169  Q
    |||||||||||||||||||||||   |||| |||| |||||||| ||||||| |||||    
T  39812061 catctgatctactctccttactatagaatctacatctcttctctctacatgcccaaac 39812004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 45601669 - 45601616
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||| ||||||| |||| |||||||| ||| ||||||||    
T  45601669 tccaactcattaatctctagatctttcttaatggtttctcttatagtttttcta 45601616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 48736081 - 48736158
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |||||||||||||| |||||  |||||||| |||||| || ||||||  ||||||||| ||||| ||||||| |||||    
T  48736081 tgatctactctcctaactacataatccacaggtcttcgctctacatgagcaaaccacctaagtctagtttctcccatc 48736158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 24549777 - 24549817
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctct 64  Q
    ||||||||||| ||||||| ||||||| |||||||||||||    
T  24549777 tccaactcattaatctctagatctttcttaatagtttctct 24549817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 30914654 - 30914726
Alignment:
Q  120 ctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccat 191  Q
    |||||||||||| ||| || || ||| |||||||| |||||||| ||||||||| ||| | ||||||||||||    
T  30914654 ctactctccttaatacaaattctacaagtcttctcgttacatgcccaaaccaccaaagccgagtttctaccat 30914726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 7531710 - 7531857
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttaccc-aacctctagcgac 99  Q
    ||||||| |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||  ||| ||||||||  | |||||  |||||||| ||     
T  7531710 ttctatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcgtatagtttttctaggtctacccttacctctagtgat 7531809  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatg 147  Q
    || |||| | | ||||||||||||||||||||||||  ||||||||||    
T  7531810 ctgactcccctccatctgatctactctccttactacataatccacatg 7531857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 32043806 - 32043613
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgac 99  Q
    ||||||| |||||||| ||||||||||||||||| |||| || ||| ||| | ||||||||||| ||| ||||| ||  | || ||| |||||||| ||     
T  32043806 ttctatcaaaaaccatgtctttctccaactcattgatctttagatccttcttgatagtttctctaatagtttttttaggtcttcccctacctctagtgat 32043707  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
     | || | | | ||||||||||| |||||||||||| | ||||||| ||||||||| ||||||  ||||||||| ||||| |||||||||||||    
T  32043706 ttgacacccctccatctgatctattctccttactacaacatccacaggtcttctctctacatggccaaaccaccaaagtctagtttctaccatc 32043613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 25985723 - 25985854
Alignment:
Q  58 tttctctcataatttttctatatttaccca-acctctagcgacctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctt 156  Q
    ||||||| ||| |||||||| || |||||  ||||||||||| || |||| | | |||||||||||||||||||||||| |||| |||| |||||||||     
T  25985723 tttctcttatattttttctagatctacccctacctctagcgatctgactcccttccatctgatctactctccttactacaaaattcacaggtcttctctc 25985822  T
Q  157 tacatgctcaaaccaccaagtcaagtttctac 188  Q
    || |||| |||||||  ||||| |||||||||    
T  25985823 taaatgcacaaaccaataagtctagtttctac 25985854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 39953338 - 39953523
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgacctaactct 107  Q
    |||||||| | |||||| |||||||||||||||| ||| ||| |||||||||||||  || |||| |||  | || ||| |||||||| || || | ||     
T  39953338 aaaaccatgtttttctctaactcatttatctctagatccttcctaatagtttctcttttagttttcctaggtctacccctacctctagtgatctgattcg 39953437  T
Q  108 cattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    | ||||||||||||||||||||||||||  |||||| | |||  |||| |||||||  |||||||| || || |||||||||||||    
T  39953438 ccttcatctgatctactctccttactacataatccataggtcacctctctacatgcctaaaccacctaaatctagtttctaccatc 39953523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 29520842 - 29520695
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacccaacctctagcgacctaactctcattcatctgatctac 123  Q
    ||||||||||| ||||||| ||| ||| ||| ||||||||| ||| ||||||||   || | | |||||| | ||  | ||| || | ||||||||||||    
T  29520842 tccaactcattaatctctaaatcgttcctaacagtttctcttatagtttttctaggcttcctctacctcttgtgatttgactatcctccatctgatctac 29520743  T
Q  124 tctccttactaccaaatccacatgtcttctctttacatgctcaaacca 171  Q
    |||||||||||| ||||| ||| ||||||||| ||||||| |||||||    
T  29520742 tctccttactacaaaatctacaagtcttctctctacatgcccaaacca 29520695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 10079996 - 10080165
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| ||||||| ||||||| ||| ||||| ||| ||| ||| ||||  | | || | |||||||| ||  | |||| | ||||| |||||||    
T  10079996 tccaactcattaatctctagatctttcttaacagtttttcttatagtttctctaggtcttcctctacctctagtgatttgactccccttcatttgatcta 10080095  T
Q  123 ctctccttactaccaaatccacatgtcttctctttacatgctcaaaccaccaagtcaagtttctaccatc 192  Q
    ||||||||||||| |||||| || ||||||||| ||||||| ||||||| || | | |||||| ||||||    
T  10080096 ctctccttactacaaaatcctcaggtcttctctctacatgcccaaaccatcaggcctagtttccaccatc 10080165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 16351585 - 16351405
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacctaactct 107  Q
    |||||||| |||||||| |||||||| ||||||| ||| ||| ||||||||||||| ||| ||||||||  | ||  || | ||| || ||| | ||||     
T  16351585 aaaaccatgtctttctc-aactcattaatctctagatccttcttaatagtttctctaatagtttttctaggtcttctcctatctcaagtgacttgactcc 16351487  T
Q  108 cattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaacca-ccaagtcaagtttctac 188  Q
    | | ||||||||||||||||||||||||   ||||| | || |||||| |||||||  |||||| ||||||| |||||||||    
T  16351486 cctccatctgatctactctccttactacatgatccaaaagttttctctctacatgcctaaaccacccaagtctagtttctac 16351405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 16917286 - 16917227
Alignment:
Q  113 atctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||||||||||||||||||| |||||| ||| | ||||||||||||||| |||||||||    
T  16917286 atctgatctactctccttacta-caaatctacaagccttctctttacatgcccaaaccacc 16917227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 30198355 - 30198473
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| ||||| ||||||||| ||||| ||||||| ||| ||||||||  | |||| |  ||||||| |  || ||| || |||||||||||||    
T  30198355 tccaactcattaatctcaatatctttcttaataatttctcttatagtttttctaagtctacctctgcctctagtgtactgactatccttcatctgatcta 30198454  T
Q  123 ctctccttactaccaaatc 141  Q
    ||||| ||||||| |||||    
T  30198455 ctctcgttactacaaaatc 30198473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 38178349 - 38178479
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| || ||||  |||||  ||||||||||||| ||| ||||||||  | | || | |||||||||||  | ||| || | |||||||||||    
T  38178349 tccaactcattaatgtctaggtctttgttaatagtttctcttatagtttttctaggtcttcctctacctctagcgatttgactatcctccatctgatcta 38178448  T
Q  123 ctctccttactaccaaatccacatgtcttct 153  Q
    ||||||||||||| ||||| ||| |||||||    
T  38178449 ctctccttactacaaaatctacaggtcttct 38178479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 29645143 - 29645082
Alignment:
Q  110 ttcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaacca 171  Q
    ||||||||||||||| |||||||||| ||||| | | ||||||||||||||||  |||||||    
T  29645143 ttcatctgatctactgtccttactacaaaatctataggtcttctctttacatgtccaaacca 29645082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 30559797 - 30559736
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||| ||| |||||||||| ||||| ||||||||||||| || |||| |||||||||    
T  30559797 catctgatccactgtccttactacaaaatctacatgtcttctctctaaatgcccaaaccacc 30559736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30812882 - 30812943
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttct 62  Q
    ||||||| |||||||| ||||| ||||||||||||||||||| ||| ||| ||| |||||||    
T  30812882 ttctatcaaaaaccatgtctttttccaactcatttatctctagatccttcctaacagtttct 30812943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 43732655 - 43732579
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |||||||||||||||  ||| ||||||||||||||||| ||||||||  ||||||||| |||||  ||||||||||||    
T  43732655 tgatctactctccttt-tacaaaatccacatgtcttctttttacatgtgcaaaccacctaagtcttgtttctaccatc 43732579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 4011282 - 4011223
Alignment:
Q  18 tctttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||| ||||||||||| |||| || ||||||| ||||||||||||| ||| ||||||||    
T  4011282 tctttatccaactcattaatctttagatctttcttaatagtttctcttatagtttttcta 4011223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 79139 - 79086
Alignment:
Q  120 ctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||| ||||||||||| ||||| ||| ||||||||| ||||||| |||||||||    
T  79139 ctaccctccttactacaaaatctacaggtcttctctatacatgcccaaaccacc 79086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 24399878 - 24399931
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||| | ||| ||| ||||||||||||| ||||||||||||    
T  24399878 tccaactcattaatctcgagatccttcttaatagtttctcttataatttttcta 24399931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 24739937 - 24739990
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||| ||| ||||||| |||||||  |||||||||||| ||||||||||||    
T  24739937 tccaactgattaatctctacatctttctcaatagtttctcttataatttttcta 24739990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 25985622 - 25985542
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccac-caagtcaagtttctaccatc 192  Q
    ||||||||||| |||||||||| | |||| ||||||||||||| | ||||||  ||| ||| |||||| |||||||||||||    
T  25985622 catctgatctagtctccttacttcaaaattcacatgtcttctc-tcacatgccaaaatcacgcaagtctagtttctaccatc 25985542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 35643695 - 35643748
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||| ||||||| ||||| ||||||| ||| ||||||||    
T  35643695 tccaactcattaatctctagatctttcttaataatttctcttatagtttttcta 35643748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 39967588 - 39967641
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||| ||| ||||||| ||||||||||||| ||| ||||||||    
T  39967588 tccaactcattaatcgctagatctttcttaatagtttctcttatagtttttcta 39967641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 5908747 - 5908707
Alignment:
Q  115 ctgatctactctccttactaccaaatccacatgtcttctct 155  Q
    ||||||||||||||||||||| ||||| ||| |||||||||    
T  5908747 ctgatctactctccttactacaaaatctacaggtcttctct 5908707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 39388976 - 39388936
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctct 64  Q
    ||||||||||| ||||||| ||||||| |||||||||||||    
T  39388976 tccaactcattaatctctagatctttcctaatagtttctct 39388936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 1525860 - 1525667
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgac 99  Q
    ||||||| |||||||| ||||||||||||||||||||||||  ||| ||| |||||||||||||  || ||||||||  | || ||| |||||||| ||     
T  1525860 ttctatcaaaaaccatgtctttctccaactcatttatctctggatccttcctaatagtttctcttgtagtttttctaggtctacccctacctctagtgat 1525761  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    || |||||| | |||||||||||||||||| ||| |  ||| |||  ||||||||| ||||||  ||| ||||| ||||| |||||||||||||    
T  1525760 ctgactctcctccatctgatctactctcctaactgcagaattcacgggtcttctctctacatgtccaagccacctaagtctagtttctaccatc 1525667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 31635994 - 31636179
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacctaactct 107  Q
    |||||||| | ||||||||||||||| ||||||||||| ||| | ||||||||||| ||| |||||||| || || ||| | |||||| ||  | ||||     
T  31635994 aaaaccatgtgtttctccaactcattgatctctatatccttcttgatagtttctctaatagtttttctagatcttcccctatctctagtgatttgactcc 31636093  T
Q  108 cattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |   ||||| |||||||||||||||||| | ||||||  ||||||||| ||||||| ||||||||| ||||| |||||||||||||    
T  31636094 ccaccatctaatctactctccttactacaacatccacgggtcttctctctacatgcccaaaccacctaagtctagtttctaccatc 31636179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 2713143 - 2712967
Alignment:
Q  18 tctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacctaactctcattcatct 116  Q
    ||||||||||||||||| ||||||| ||| ||| ||||||||||||| ||| ||||||||  | || |||   |||||| ||  | |||||| | |||||    
T  2713143 tctttctccaactcattcatctctagatccttcttaatagtttctcttatagtttttctaggtcttcccctgactctagtgatttgactctcctccatct 2713044  T
Q  117 gatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    ||||||||||||||  |||  |||||||| ||||||||| ||||||| ||||||||| ||||| ||| |||||||||    
T  2713043 gatctactctccttcatacagaatccacaggtcttctctctacatgcccaaaccacctaagtctagtctctaccatc 2712967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 14667964 - 14667819
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctat-atttacccaacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| ||||||| ||||||| || ||| |||||| ||| ||||||||  |||| | |  ||||||| ||  ||||| | || |||||||||||    
T  14667964 tccaactcattaatctctagatctttcttagtagcttctcttatagtttttctaggatttccgctgcctctagtgatataactataatccatctgatcta 14667865  T
Q  123 ctctccttactaccaaatccacatgtcttctctttacatgctcaaa 168  Q
    |||||||||||||  |||  ||||||||||||| ||||||| ||||    
T  14667864 ctctccttactacataatgtacatgtcttctctctacatgcccaaa 14667819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 21916077 - 21915904
Alignment:
Q  20 tttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacccaacctctagcgacctaactctcattcatctgat 119  Q
    ||||||||||||||||||||||| ||| ||| |||| |||||||| ||  ||||||| | | ||||| | |||||| || || |||  | | ||| ||||    
T  21916077 tttctccaactcatttatctctagatccttcctaattgtttctcttatcgtttttctgtgtctaccctatctctagtgatctgacttccctccatatgat 21915978  T
Q  120 ctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |||||||||| ||||   ||| |||| ||||| ||| |||||||| |||||||| ||||| |||||||| ||||    
T  21915977 ctactctcctaactaaataatacacaagtcttttctctacatgcttaaaccacctaagtctagtttctatcatc 21915904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 38578615 - 38578780
Alignment:
Q  29 ctcatttatctctatatctttcataatagtttctctcataatttttctatatttaccca-acctctagcgacctaactctcattcatctgatctactctc 127  Q
    ||||||||| |||| ||| |||||||||||||||||  || ||||||||  | |||||  || ||||| ||  | |||||| |  |||||||||| |||     
T  38578615 ctcatttatttctagatccttcataatagtttctcttgtagtttttctaggtctacccctacatctagtgatttgactctcctcgatctgatctaatctg 38578714  T
Q  128 cttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    || ||||   |||| ||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  38578715 ctaactatataatctacatgtcttctctttacatgctcaaaccacctaagtttagtttctaccatc 38578780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 42199386 - 42199309
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    ||||||||||||||||||||  |||| ||||||||||||| ||||||| ||||||||| ||||| |||||| ||||||    
T  42199386 tgatctactctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatc 42199309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 11002487 - 11002681
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatattta-cccaacctctagcgac 99  Q
    ||||||| ||||| ||  |||||||||||||||||||||||| ||| ||  ||||||||| ||| ||| ||||||||  | || |||||||||||| ||     
T  11002487 ttctatcaaaaactatgcctttctccaactcatttatctctagatcgttactaatagtttgtcttatagtttttctaggtctaccccaacctctagtgat 11002586  T
Q  100 ctaactctcattcatctgatctactctcct--tactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccat 191  Q
    || |||| | | |||||||||||||| |||   |||||  | ||||||  ||||||   ||||||| ||||||||| ||||| ||||||||||||    
T  11002587 ctgactcccctacatctgatctactcccctaaaactacagagtccacagatcttctacctacatgcccaaaccacctaagtctagtttctaccat 11002681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 37065691 - 37065632
Alignment:
Q  2 tctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttc 61  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||    
T  37065691 tctatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttc 37065632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 21952571 - 21952400
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgac 99  Q
    ||||||| |||||||| |||||||||||| |||| ||||||| ||| |||  |||||||  ||||||| ||||||||  | || ||| |||||||| ||     
T  21952571 ttctatcaaaaaccatgtctttctccaacccattaatctctagatccttctcaatagtt--tctcatagtttttctaggtcttcccctacctctagtgat 21952474  T
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
     | |||| | | ||||||||||| |||||||||||   |||||||| | ||||||| ||||||  |||||||||    
T  21952473 ttgactcccctccatctgatctattctccttactatagaatccacaggacttctctctacatgtccaaaccacc 21952400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 34734461 - 34734593
Alignment:
Q  2 tctatctaaaaccatttctttctccaactcatttatctct--atatctttcataatagtttctctcataatttttctatatttaccc-aacctctagcga 98  Q
    |||||| |||| ||| ||||||||||||||||||||||||  ||||| ||||||||||||| ||  ||| |||||||| || |||||  ||||| || ||    
T  34734461 tctatcaaaaatcatgtctttctccaactcatttatctctagatatccttcataatagtttatcgtatagtttttctagatctacccgtacctccagtga 34734560  T
Q  99 cctaactctcattcatctgatctactctcctta 131  Q
     || |||| | ||||| ||||||| ||||||||    
T  34734561 tctgactccccttcatttgatctattctcctta 34734593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33667651 - 33667575
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||| |||||||| ||||||||||||||||| ||||||| ||| ||| |||||  |||||| ||| ||||||||    
T  33667651 ttctatcaaaaaccatgtctttctccaactcattaatctctagatccttcttaataacttctcttatagtttttcta 33667575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 1935330 - 1935275
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctct 64  Q
    |||||| | ||||||||||||||||||||||||| ||| ||| |||||||||||||    
T  1935330 aaaaccttgtctttctccaactcatttatctctagatccttcctaatagtttctct 1935275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 9917628 - 9917687
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaacca 171  Q
    ||||||||| |||||| ||||||| ||||| |||||||||||||||||| || |||||||    
T  9917628 catctgatcgactctctttactacaaaatcaacatgtcttctctttacacgcacaaacca 9917687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 7359438 - 7359498
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||||||||||||||||||  |||| |||| |||||||| ||||||| |||||||||    
T  7359438 catctgatctactctccttactacagaatctacatatcttctctctacatgc-caaaccacc 7359498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 9917539 - 9917592
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| |||||||||||||||  |||||||||||| ||| ||||||||    
T  9917539 tccaactcattgatctctatatctttctaaatagtttctctaatagtttttcta 9917592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 9235167 - 9235107
Alignment:
Q  113 atctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||||||||| |||||||  |||| ||| ||||||||| |||||||||||| ||||    
T  9235167 atctgatctactctcgttactacagaatctacaagtcttctctctacatgctcaaaacacc 9235107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 10082819 - 10082887
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    |||||||| ||||||||||||||||| ||||||| ||| ||  || |||||||||| ||| ||||||||    
T  10082819 aaaaccatgtctttctccaactcattaatctctagatccttgttactagtttctcttatagtttttcta 10082887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3442937 - 3442988
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcat 52  Q
    ||||||| |||||||| ||||||||||| ||||| ||||||| |||||||||    
T  3442937 ttctatcaaaaaccatgtctttctccaattcattaatctctagatctttcat 3442988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 14749411 - 14749332
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaacca-ccaagtcaagtttctacca 190  Q
    ||||||||| ||||||||||| ||  |||||||| ||||||||| ||||||  ||||||| | ||||| |||||||||||    
T  14749411 catctgatcgactctccttacaacagaatccacaggtcttctctctacatgtccaaaccatctaagtctagtttctacca 14749332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 15369884 - 15369939
Alignment:
Q  22 tctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    |||||||||||||||||| || || |||| ||||||||||||| ||| ||||||||    
T  15369884 tctccaactcatttatctttagatttttcttaatagtttctcttatactttttcta 15369939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 16134044 - 16134095
Alignment:
Q  8 taaaaccatttctttctccaactcatttatctctatatctttcataatagtt 59  Q
    ||||||||| ||||||||||| |||||||||| || ||| ||||||||||||    
T  16134044 taaaaccatgtctttctccaaatcatttatctttagatccttcataatagtt 16134095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 6367981 - 6368037
Alignment:
Q  20 tttctccaactcatttatctctatatctttcataatagtttctctcataatttttct 76  Q
    |||||| ||||||||| ||||||||||| ||||||||| |||||  |||||| ||||    
T  6367981 tttctcgaactcatttctctctatatctctcataatagattctcatataattgttct 6368037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 6889185 - 6889133
Alignment:
Q  25 ccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    |||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||||||    
T  6889185 ccaactaattaatctctaaatctttcctaatagtttctcttatagtttttcta 6889133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 9235240 - 9235200
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctct 64  Q
    |||| |||||| ||||||||||||||| |||||||||||||    
T  9235240 tccagctcattaatctctatatctttcttaatagtttctct 9235200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 28186864 - 28186904
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctct 64  Q
    ||||||||||| ||||||| ||||||| |||||||||||||    
T  28186864 tccaactcattaatctctaaatctttcttaatagtttctct 28186904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 11581652 - 11581467
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttaccca-acctctagcgacctaactct 107  Q
    |||| ||| ||||||| |||||||||||||| || ||||||| ||||||||||||| ||| ||||||||  | | | || |||||||| ||  | ||||     
T  11581652 aaaatcatgtctttcttcaactcatttatctatagatctttcttaatagtttctcttatagtttttctaggtcttctcatacctctagtgatttgactca 11581553  T
Q  108 cattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    | | |||||||| |||||| ||||||||  ||| |||||||||||||| ||||| | ||||||||| ||||| |||||||||||||    
T  11581552 cctacatctgatgtactcttcttactacataattcacatgtcttctctctacatacccaaaccacctaagtctagtttctaccatc 11581467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 37351615 - 37351430
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacctaactct 107  Q
    |||||||| |||||||||| |||||| ||||||| ||||||| | || |||||||| ||| ||||||||  | || ||| |||||||| ||  |  |||     
T  37351615 aaaaccatatctttctccatctcattaatctctagatctttcttgattgtttctctaatagtttttctaggtcttcccctacctctagtgatttgcctcc 37351516  T
Q  108 cattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccac-caagtcaagtttctaccatc 192  Q
    | | |||||||||||||||||||||||||  || |||||| |||||||  |||||| |||||||| |||||| |||||||||||||    
T  37351515 cttccatctgatctactctccttactaccgcattcacatgacttctctccacatgcccaaaccactcaagtctagtttctaccatc 37351430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 31454405 - 31454485
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccaccaagtcaagtttctaccatc 192  Q
    |||||||||||||||||| |||||  ||||| ||| |||||||| ||||||| |||||||||||||| |||||||||||||    
T  31454405 catctgatctactctcctaactacagaatccgcatttcttctctctacatgcacaaaccaccaagtctagtttctaccatc 31454485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 19737113 - 19737040
Alignment:
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||| | ||||||||||||||| |||||||| | ||| ||| ||||||||| | |||||||||||||||    
T  19737113 ctaactctcctccatctgatctactcttcttactacaacatctacaggtcttctctctgcatgctcaaaccacc 19737040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 19758016 - 19757943
Alignment:
Q  100 ctaactctcattcatctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||| | ||||||||||||||| |||||||| | ||| ||| ||||||||| | |||||||||||||||    
T  19758016 ctaactctcctccatctgatctactcttcttactacaacatctacaggtcttctctctgcatgctcaaaccacc 19757943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 21200648 - 21200571
Alignment:
Q  116 tgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    |||||||||||||||||| |  |||| ||||||||||||| ||||||| ||||||||| ||||| |||||| ||||||    
T  21200648 tgatctactctccttactgcagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatc 21200571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 23534659 - 23534771
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| |||||||  |||||| ||||||||||| | ||||||||| |   | | || | |||||||| || |||||| |||| |||||||||||    
T  23534659 tccaactcattaatctctaagtctttcctaatagtttctgttataatttttttgggtcttcctctacctctagtgatctaactatcatccatctgatcta 23534758  T
Q  123 ctctccttactac 135  Q
    |||||||||||||    
T  23534759 ctctccttactac 23534771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 39600770 - 39600920
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| | ||||| ||||||| ||||||||||||| ||| ||||||||  | || | | |||||| || | || ||| || |  ||||||||||    
T  39600770 tccaactcattaacctctaaatctttcttaatagtttctcttatagtttttctaggtcttcctctacctcttgcaatctgactatcctcgatctgatcta 39600869  T
Q  123 ctctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||||||  ||||  |||| ||| |||||||||||||||||  ||||||||    
T  39600870 ctctcctcgctacagaatctacaggtcttctctttacatgccaaaaccacc 39600920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 43308667 - 43308617
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatg 162  Q
    |||||||||||||||| ||||||| ||||| ||||||||| ||||||||||    
T  43308667 catctgatctactctcattactacaaaatctacatgtcttttctttacatg 43308617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 45289180 - 45289330
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatat-ttacccaacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| ||||||| ||||||| ||||||||||||| ||| ||||  || || || | | | |||| |  | |||||| || | |||||||||||    
T  45289180 tccaactcattaatctctaaatctttcctaatagtttctcttatagttttcatagatcttcctctatctcttgtaatctaactatcctccatctgatcta 45289279  T
Q  123 ctctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||| |||||||| ||||| ||| || |||||| ||| ||| |||||||||    
T  45289280 ctcttcttactacaaaatctacaagtgttctctctacgtgcccaaaccacc 45289330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 50249491 - 50249429
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacca 174  Q
    |||||||||||||||||||||||   |||| |||||||||| || ||||||| ||||||||||    
T  50249491 catctgatctactctccttactaaagaatctacatgtcttcactctacatgcccaaaccacca 50249429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 26990421 - 26990353
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    |||| ||| ||||||||||||||||| ||||||| ||| ||| | ||||||||||| ||| ||||||||    
T  26990421 aaaaacatgtctttctccaactcattgatctctagatccttcttgatagtttctctaatagtttttcta 26990353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 36820067 - 36820119
Alignment:
Q  25 ccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    |||||||||| ||||||| ||||||| ||||||||||||| ||| ||||||||    
T  36820067 ccaactcattaatctctagatctttcttaatagtttctcttatagtttttcta 36820119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 29375038 - 29374957
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc-aagtcaagtttctaccatc 192  Q
    ||||| |||||| ||||||||||| ||||| ||| ||||| ||| |||| || |||| |||| ||||| |||||||||||||    
T  29375038 catctaatctacactccttactacaaaatctacaggtcttttctctacaagcccaaatcacctaagtcgagtttctaccatc 29374957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 30344165 - 30344124
Alignment:
Q  128 cttactaccaaatccacatgtcttctctttacatgctcaaac 169  Q
    |||||||||||||||||||||||||||| | ||||| |||||    
T  30344165 cttactaccaaatccacatgtcttctctctgcatgcccaaac 30344124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 32052607 - 32052660
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| |||| || ||||||| ||||||||| ||||||| ||||||||    
T  32052607 tccaactcattaatctataaatctttcctaatagtttatctcatagtttttcta 32052660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 39235242 - 39235181
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||||||||| | |||||| | ||| ||| ||||||||| ||||||| |||||||||    
T  39235242 catctgatctactcttcgtactacaacatctacaggtcttctctctacatgcccaaaccacc 39235181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 40116557 - 40116610
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||| |||| || ||||||||||||| ||| ||||||||    
T  40116557 tccaactcattaatctctaaatctatcctaatagtttctcttatagtttttcta 40116610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 46431768 - 46431821
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||| ||||||  ||||||||||||| ||| ||||||||    
T  46431768 tccaactcattaatctctagatcttttttaatagtttctcttatagtttttcta 46431821  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 19162676 - 19162716
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctct 64  Q
    ||||||||||| ||||||| ||||||| |||||||||||||    
T  19162676 tccaactcattaatctctaaatctttcctaatagtttctct 19162716  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 38971 - 38903
Alignment:
Q  9 aaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||| ||| ||||||||    
T  38971 aaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcttatagtttttcta 38903  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10617300 - 10617376
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||| |||||||| ||||||||||||||||| ||||||| ||| ||| |||| |||||||| ||| ||||||||    
T  10617300 ttctatcaaaaaccatgtctttctccaactcattaatctctagatccttcttaatggtttctcttatagtttttcta 10617376  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 9593797 - 9593945
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttctatatttacc-caacctctagcgacctaactctcattcatctgatcta 122  Q
    ||||||||||| |||||||  |||||| ||||||||||||| ||||||||||||  | | || | |||||| |  |  | |||||| | |||||||||||    
T  9593797 tccaactcattaatctctaagtctttcctaatagtttctcttataatttttctaggtcttcctctacctcttg--atttgactctcctccatctgatcta 9593894  T
Q  123 ctctccttactaccaaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    |||| ||||||||   ||| ||||||||||||| ||||||| |||||||||    
T  9593895 ctcttcttactacagcatctacatgtcttctctctacatgcccaaaccacc 9593945  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 6907005 - 6907054
Alignment:
Q  112 catctgatctactctccttactaccaaatccacatgtcttctctttacat 161  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  6907005 catctgatctactctccttactacaaaatctacatgtcttctctctacat 6907054  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 7513455 - 7513518
Alignment:
Q  1 ttctatctaaaaccatttctttctccaactcatttatctctatatctttcataatagtttctct 64  Q
    ||||||| |||||||| ||||||||||||||||| ||||||| ||| ||| ||| |||||||||    
T  7513455 ttctatcaaaaaccatgtctttctccaactcattcatctctagatccttcctaaaagtttctct 7513518  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 24665917 - 24665853
Alignment:
Q  110 ttcatctgatctactctccttactac-caaatccacatgtcttctctttacatgctcaaaccacc 173  Q
    ||||||||||||||||||||||||||  ||||| ||| ||||||||| ||||||  |||||||||    
T  24665917 ttcatctgatctactctccttactacaaaaatctacaggtcttctctctacatgtccaaaccacc 24665853  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 35199714 - 35199764
Alignment:
Q  27 aactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    |||||||| ||||||| ||||||| ||||||||||| | ||||||||||||    
T  35199714 aactcattaatctctagatctttcctaatagtttcttttataatttttcta 35199764  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 31831948 - 31832001
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||| | ||||||| ||||||| ||||||||||||| ||| ||||||||    
T  31831948 tccaactcagtaatctctagatctttcttaatagtttctctgatagtttttcta 31832001  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 178509 - 178562
Alignment:
Q  24 tccaactcatttatctctatatctttcataatagtttctctcataatttttcta 77  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||    
T  178509 tccaactcattaatctctatatctttcttaatagtttctcttatagtttttcta 178562  T

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