View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8555_low_10 (Length: 336)
Name: NF8555_low_10
Description: NF8555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8555_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 20295614 - 20295935
Alignment:
| Q |
1 |
aatacaaatcaagagaaactgacacacggccactatatttttatataaaaaagatattaagttttgttgtgacannnnnnnncttccaattttattcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20295614 |
aatacaaatcaagagaaactgacacacggccactatatttttatataaaaaagatattaagttttgttgtgacattttttttcttccaattttattcttc |
20295713 |
T |
|
| Q |
101 |
acttgaacatttatttacaattttattattccttcccaatcaaaacttctattattttttagattatagcggaaagacgaactcgttaataataagaata |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20295714 |
acttgaacatttgtttacaattttattattccttcccaatcaaaacttctattattttttagattatagcggaaagacgaactcgttaataataggaata |
20295813 |
T |
|
| Q |
201 |
gttgtgaatatatgctagggtacttcagaagtttcttagcgtagcatattaagtagcatatttcttttgtaattaatactattaatcgtgtaattcccta |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20295814 |
gttgtgaatatatgctagggtgcttcagaagtttcttagcgtagcatattaagtagcatatttcttttgtaattaatactattaatcgtgtaattcccta |
20295913 |
T |
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| Q |
301 |
tataataaaacttcagtgatgt |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
20295914 |
tataataaaacttcagtgatgt |
20295935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 21082245 - 21082566
Alignment:
| Q |
1 |
aatacaaatcaagagaaactgacacacggccactatatttttatataaaaaagatattaagttttgttgtgacannnnnnnncttccaattttattcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21082245 |
aatacaaatcaagagaaactgacacacggccactatatttttatataaaaaagatattaagttttgttgtgacattttttttcttccaattttattcttc |
21082344 |
T |
|
| Q |
101 |
acttgaacatttatttacaattttattattccttcccaatcaaaacttctattattttttagattatagcggaaagacgaactcgttaataataagaata |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21082345 |
acttgaacatttgtttacaattttattattccttcccaatcaaaacttctattattttttagattatagcggaaagacgaactcgttaataataggaata |
21082444 |
T |
|
| Q |
201 |
gttgtgaatatatgctagggtacttcagaagtttcttagcgtagcatattaagtagcatatttcttttgtaattaatactattaatcgtgtaattcccta |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21082445 |
gttgtgaatatatgctagggtgcttcagaagtttcttagcgtagcatattaagtagcatatttcttttgtaattaatactattaatcgtgtaattcccta |
21082544 |
T |
|
| Q |
301 |
tataataaaacttcagtgatgt |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
21082545 |
tataataaaacttcagtgatgt |
21082566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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