View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8555_low_12 (Length: 260)
Name: NF8555_low_12
Description: NF8555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8555_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 18642696 - 18642905
Alignment:
| Q |
42 |
aaaattaaaacatgtttcaaatctcattaagtcattcaacttaatgttacgtatccatgaccaagaaaccaaagcaactaaaagaccttttgttgtatta |
141 |
Q |
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| T |
18642696 |
aaaattaaaacatgtttcaaatctcattaagtcattcaacttaatgttacgtatccatgaccaagaaaccaaagcaactaaaagaccttttgttgtatta |
18642795 |
T |
|
| Q |
142 |
ctagagccatctgtgaccgggatcttcagtatactgcactggatagaggacagctaagatctaacctgcaaccaaagtacagtgattcacatctaaacat |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18642796 |
ctagagccatctgtgaccgggatcttcagtatactgcactggatagaggacagcaaagatctaacctgcaaccaaagtacagtgattcacatctaaacat |
18642895 |
T |
|
| Q |
242 |
atagaataat |
251 |
Q |
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|||||||||| |
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| T |
18642896 |
atagaataat |
18642905 |
T |
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