View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8555_low_2 (Length: 764)
Name: NF8555_low_2
Description: NF8555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8555_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 19 - 557
Target Start/End: Complemental strand, 12552841 - 12552303
Alignment:
| Q |
19 |
gattcaccttttgaaatatcctgctttgaagactcactttgtccataagagtataagctagggttcatagcatattcttcaccaccactcaaacctaatg |
118 |
Q |
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| T |
12552841 |
gattcaccttttgaaatatcctgctttgaagactcactttgtccataagagtataaactagggttcatagcatattcttcaccaccactcaaacctaatg |
12552742 |
T |
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| Q |
119 |
gctcgttagtttgaattgtgtttgttccattcaaaaacaaattgaatggattaaagctagggttaatattccctaaggggttataaggataatttcccat |
218 |
Q |
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| T |
12552741 |
gctcattagtttgaattgtgtttgttccattcaaaaacaaattgaatggattaaagctagggttaatattccctaaggggttataaggataatttcccat |
12552642 |
T |
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| Q |
219 |
gttaccaaatgaattatttgtgttcataatttgcaacatattttgcaacaattgcattttggctaggtgggtaatatctggttgtaaaccaagagggttg |
318 |
Q |
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| T |
12552641 |
gttaccaaatgaattatttgtgttcataatttgcaacatattttgcaacaattgcattttggctaggtgggtaatatctggttgtaaaccaagagggttg |
12552542 |
T |
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| Q |
319 |
ttgctaaaagtattgcctatatttgacatgccaagtaagtttgaaagactcatgaggtgattgtaatcagttcttggcttgtgagtttcaggatcaattc |
418 |
Q |
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| T |
12552541 |
ttgctaaaagtattgcctatatttgacatgccaagtaagtttgaaagactcatgaggtgattgtaatcagttcttggcttgtgagtttcaggatcaattc |
12552442 |
T |
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| Q |
419 |
ccatcttgagaagctttttccttatgtttgtgttccaataattttttatctcgttatctgttcgtcctggtagatgagctgcaatcttcgaccacctaca |
518 |
Q |
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| T |
12552441 |
ccatcttgagaagctttttccttatgtttgtgttccaataattttttatctcgttatctgttcgtcctggtagatgagctgcaatcttcgaccatctaca |
12552342 |
T |
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| Q |
519 |
agacaaatnnnnnnnntcacattatttatagctctcgaa |
557 |
Q |
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| T |
12552341 |
agacaaataaaaaaaatcacattatttatagctctcgaa |
12552303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 558 - 745
Target Start/End: Complemental strand, 12552231 - 12552042
Alignment:
| Q |
558 |
aaaattgacgtct--aacacttagtgatggaattagagacgaaattattttttccgtctgtgaaattccgtcgctatctttagagtgatttcaatatcat |
655 |
Q |
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| T |
12552231 |
aaaattgacgtctctaacacttagtgatggaattagagacgaaattattttttccgtctctgaaattccgtcgctatctttagagtgatttcaatatcat |
12552132 |
T |
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| Q |
656 |
tttctacataagaaaaaacaagttaagaaatatacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatctgtga |
745 |
Q |
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| T |
12552131 |
tttctacataagaaaaaacaagataagaaatatacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatcagtga |
12552042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 42422618 - 42422690
Alignment:
| Q |
409 |
ggatcaattcccatcttgagaagctttttccttatgtttgtgttccaataattttttatctcgttatctgttc |
481 |
Q |
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| T |
42422618 |
ggatcaattcccatcttaatgagctttttcttgatgtgtgtgttccaatgatttttaatctcattgtctgttc |
42422690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 50200020 - 50200060
Alignment:
| Q |
450 |
gttccaataattttttatctcgttatctgttcgtcctggta |
490 |
Q |
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| T |
50200020 |
gttccaataattttttatctcattatctgtacgtcctggta |
50200060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 490
Target Start/End: Complemental strand, 27808608 - 27808566
Alignment:
| Q |
448 |
gtgttccaataattttttatctcgttatctgttcgtcctggta |
490 |
Q |
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| T |
27808608 |
gtgttccaataattctttatctcattatctgttcttcctggta |
27808566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 516
Target Start/End: Complemental strand, 13344938 - 13344872
Alignment:
| Q |
450 |
gttccaataattttttatctcgttatctgttcgtcctggtagatgagctgcaatcttcgaccaccta |
516 |
Q |
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| T |
13344938 |
gttccaatagttctttatctcattatctgttcgtcctggtaaatgtgatgctatcaccgaccaccta |
13344872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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