View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8555_low_3 (Length: 662)
Name: NF8555_low_3
Description: NF8555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8555_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 556; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 20 - 660
Target Start/End: Original strand, 1160506 - 1161155
Alignment:
| Q |
20 |
gcttaatttgaactttgtaatgccgccaaatttgtttattcattgggaatgttggagcggggggaatttgaataaaaaggtgcggaaaggtttgcgtttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1160506 |
gcttaatttgaactttgtaatgccgccaaatttgtttattcattgggaatgttggagcggggggaatttgaataaaaaggtgcggaaaggtttgcgtttg |
1160605 |
T |
|
| Q |
120 |
atttgggaggcgggaatttgggtgttatggaaagcgagaaacgaccgcatcttcaataatgtcattgtaacttgggaagagctcgtggaggaggtgaagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1160606 |
atttgggaggcgggaatttgggtgttatggaaagcgagaaacgaccggatcttcaataatgtcattgtaacttgggaagagctcgtggaggaggtgaagg |
1160705 |
T |
|
| Q |
220 |
taatgacttggaggtggatgcttagccgaaccacaactccggcgtgtatgttttatgagtggagttggagtccgcgggattgcttagcacgttaatgagt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1160706 |
taatgacttggaggtggatgcttagccgaaccacaactccggcgtgtatgttttatgagtggagttggagtccgcgggattgcttagcacgttaatgagc |
1160805 |
T |
|
| Q |
320 |
tgctgcctccttttgnnnnnnnggtccagtggtgtt-gctgctcactggcagcgatgctgtcatgacagtccagcaagttttgttgtgttgtgtagccgg |
418 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1160806 |
tgctgcctccttttgtttttttggtccagtggtgttggctgctcactggcagcgatgctgtcatgacagtccagcaagttttgttgtgtcgtgtagccgg |
1160905 |
T |
|
| Q |
419 |
ttttttgaggaaggtctggcctctttggtggcagctttgctggtctgttggaggcggtgctaaggggttgaattttgatggttcataattggatttcaga |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1160906 |
ttttttgaggaaggtctggcctctttggtggcagctttgctggtctattggaggcggtgctaaggggttgaattttgatggttcataattggatttcaga |
1161005 |
T |
|
| Q |
519 |
gccatagctcaagcctctgtggtgttgtgattgtttgtttttgtggttctagagatcaattgttttctataggttat--------gtctttggggtgatg |
610 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1161006 |
gccataactcaagcctctgtagtgttgtgattgtttgtttttgtggttctagagatcaattgttttctataggttatgtctttgggtctttggggtgatg |
1161105 |
T |
|
| Q |
611 |
ttccgcctatatgcggcatctttgtttttattgccaccgtccgtttgcgt |
660 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
1161106 |
ttccgcctatatgtggcatctttgtttttattgccaccgtctctttgcgt |
1161155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 10430324 - 10430373
Alignment:
| Q |
27 |
ttgaactttgtaatgccgccaaatttgtttattcattgggaatgttggag |
76 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10430324 |
ttgaactttatcatgcccccaaatttgtttattcattgggaatgttggag |
10430373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 9850775 - 9850737
Alignment:
| Q |
45 |
ccaaatttgtttattcattgggaatgttggagcgggggg |
83 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
9850775 |
ccaaatttatttattcattgggaatgttggagtgggggg |
9850737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 356 - 501
Target Start/End: Complemental strand, 21113901 - 21113756
Alignment:
| Q |
356 |
gctgctcactggcagcgatgctgtcatgacagtccagcaagttttgttgtgttgtgtagccggttttttgaggaaggtctggcctctttggtggcagctt |
455 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||||| ||||| |||||||| ||||| |||||| ||| |
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|
| T |
21113901 |
gctgttcactggcagcgctgctgtcatgacagtccagcaccagttgctgtgttgtgtagcctgttttgtgaggtaggtctggggtcttttgtggcaactt |
21113802 |
T |
|
| Q |
456 |
tgctggtctgttggaggcggtgctaaggggttgaattttgatggtt |
501 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
21113801 |
tgctgggctgttggaggcggtgctatggggttgaattttggtggtt |
21113756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 39844946 - 39845101
Alignment:
| Q |
25 |
atttgaactttgtaatgccgccaaatttgtttattcattgggaatgttggagcggggggaatttgaataaaaaggtgcggaaaggtttgcgtttgatttg |
124 |
Q |
| |
|
||||||| ||||||||||| || ||||| |||||||||||||||||||||| ||||| | | ||||| || | ||||| || |||||| |||| || |
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|
| T |
39844946 |
atttgaattttgtaatgccaccgaatttaattattcattgggaatgttggagtgggggatctattaataagaaaattcggaagggattgcgtatgatatg |
39845045 |
T |
|
| Q |
125 |
ggaggcgggaatttgggtgttatggaaagcgagaaacgaccgcatcttcaataatg |
180 |
Q |
| |
|
||||| || |||||||||| | ||||| |||||||| ||||| || || ||||||| |
|
|
| T |
39845046 |
ggaggtggtaatttgggtgatttggaaggcgagaaatgaccggatttttaataatg |
39845101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 93 - 304
Target Start/End: Original strand, 21977354 - 21977565
Alignment:
| Q |
93 |
aaaaaggtgcggaaaggtttgcgtttgatttgggaggcgggaatttgggtgttatggaaagcgagaaacgaccgcatcttcaataatgtcattgtaactt |
192 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| | || |||||| | ||||||| ||| || || ||||| || |||||||| || |||| | |
|
|
| T |
21977354 |
aaaaaggtccggaaaggtttgcgtatgatttgggaggttgccatatgggtgatttggaaagtgaggaatgaacgcatttttaataatgtgatagtaatgt |
21977453 |
T |
|
| Q |
193 |
gggaagagctcgtggaggaggtgaaggtaatgacttggaggtggatgcttagccgaaccacaactccggcgtgtatgttttatgagtggagttggagtcc |
292 |
Q |
| |
|
|||| ||| | ||||| ||||||||||| ||| ||||||||||||| || | ||||| |||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
21977454 |
gggaggagattgtggaagaggtgaaggtgatgtcttggaggtggattattggtagaacctcaactccgagttgcatgttctatgagtggagttggagtcc |
21977553 |
T |
|
| Q |
293 |
gcgggattgctt |
304 |
Q |
| |
|
||||||||||| |
|
|
| T |
21977554 |
tcgggattgctt |
21977565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 12172354 - 12172398
Alignment:
| Q |
32 |
ctttgtaatgccgccaaatttgtttattcattgggaatgttggag |
76 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||| |||||||| |
|
|
| T |
12172354 |
ctttgtaatgcctccaaacttgtttatccattgggagtgttggag |
12172398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 4636933 - 4636666
Alignment:
| Q |
25 |
atttgaactttgtaatgccgccaaatttgtttattcattgggaatgttggagcggggggaatttgaataaaaaggtgcggaaaggt-ttgcgtttgattt |
123 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||| || |||| ||| | | ||||| | ||| | |||||| |
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|
| T |
4636933 |
atttgaattttgtaatgccgcctaatttgtttattcattgggagtgttggagtggggggccattacataagaagattc-gaaagctattgaggatgattt |
4636835 |
T |
|
| Q |
124 |
gggaggcgggaatttgggtgttatggaaagcgagaaacgaccgcatcttcaataatgtcattgtaacttgggaagagctcgtggaggaggtgaaggtaat |
223 |
Q |
| |
|
|||||| || ||||||||| || |||||||| ||||| | || || |||||||||| ||| | ||||| ||| | |||||| ||||||||| | |
|
|
| T |
4636834 |
gggaggtggtaatttgggttttgtggaaagctagaaatgggcgtattttcaataatgaggttgcttcgtgggaggagttaatggaggcggtgaaggtgtt |
4636735 |
T |
|
| Q |
224 |
gacttggaggtggatgcttagccgaaccacaactccggcgtgtatgttttatgagtggagttggagtcc |
292 |
Q |
| |
|
| | ||||||||||| || | ||||||||| |||||| || ||||||||||||||||||||| |||| |
|
|
| T |
4636734 |
gtcgtggaggtggattctcggtagaaccacaattccggcttgcatgttttatgagtggagttggtgtcc |
4636666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 52612999 - 52612732
Alignment:
| Q |
25 |
atttgaactttgtaatgccgccaaatttgtttattcattgggaatgttggagcggggggaatttgaataaaaaggtgcggaaaggtttgcgtttgatttg |
124 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| ||||||||||| |||||||| ||||| | |||| ||| | ||||| || ||| | ||||||| |
|
|
| T |
52612999 |
atttgaattttataatgccgccaaatttgttaattcattgggagtgttggagtgggggattgatacataagaagattcggaagggattgaggatgatttg |
52612900 |
T |
|
| Q |
125 |
ggaggcgggaatttgggtgttatggaaagcgagaaacgaccgcatcttcaataatgtcattgtaacttgggaagagctcgtggaggaggtgaaggtaatg |
224 |
Q |
| |
|
||||| || |||||||| || ||||||||||| || || || || |||||||||| | || | ||||| ||||| |||||| ||||||| || || |
|
|
| T |
52612899 |
ggaggtggtgatttgggttttgtggaaagcgaggaatgatcgtattttcaataatgagaatgctccatgggatgagcttgtggagaaggtgaaagtgttg |
52612800 |
T |
|
| Q |
225 |
acttggaggtggatgcttagccgaaccacaactccggcgtgtatgttttatgagtggagttggagtcc |
292 |
Q |
| |
|
| ||||||||| | ||| | || | |||| ||||| |||||||||||||||||||||||| |||| |
|
|
| T |
52612799 |
tcatggaggtggttacttggtagatcttcaacaccggcttgtatgttttatgagtggagttggtgtcc |
52612732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 1547670 - 1547727
Alignment:
| Q |
25 |
atttgaactttgtaatgccgccaaatttgtttattcattgggaatgttggagcggggg |
82 |
Q |
| |
|
||||||| ||||||||||| || ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
1547670 |
atttgaattttgtaatgccaccgaatttaattattcattgggaatgttggagtggggg |
1547727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 31524760 - 31524804
Alignment:
| Q |
32 |
ctttgtaatgccgccaaatttgtttattcattgggaatgttggag |
76 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
31524760 |
ctttgtaatgcctccaaatttgtttatccattgggagtgttggag |
31524804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 43073973 - 43073925
Alignment:
| Q |
28 |
tgaactttgtaatgccgccaaatttgtttattcattgggaatgttggag |
76 |
Q |
| |
|
|||||||| | ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
43073973 |
tgaactttatcatgccaccaaacttgtttattcattgggaatgttggag |
43073925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 14459379 - 14459436
Alignment:
| Q |
25 |
atttgaactttgtaatgccgccaaatttgtttattcattgggaatgttggagcggggg |
82 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
14459379 |
atttgaattttgttatgccgccgaatttgtttatccattgggaatgttggagcagggg |
14459436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 10124224 - 10124276
Alignment:
| Q |
24 |
aatttgaactttgtaatgccgccaaatttgtttattcattgggaatgttggag |
76 |
Q |
| |
|
|||||||| ||| ||||||| ||||| ||| ||||||||||||| |||||||| |
|
|
| T |
10124224 |
aatttgaattttataatgcctccaaacttggttattcattgggagtgttggag |
10124276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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