View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8555_low_5 (Length: 450)
Name: NF8555_low_5
Description: NF8555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8555_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 194 - 446
Target Start/End: Original strand, 5195354 - 5195606
Alignment:
| Q |
194 |
gtatatattgacgccattggaaaaactttcaagatttttatgataatgtcaatttttgtaaagatgacaggacattgttaattatgacaggactatgcaa |
293 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5195354 |
gtatatattgacgccattggaaaaacttttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggactatgcaa |
5195453 |
T |
|
| Q |
294 |
tttgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaacaaacctcagagttcttgacctt |
393 |
Q |
| |
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||| |||||||| |||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
5195454 |
ttttaaggatttggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaagcaacttaacaaacctcagagttcttgaactt |
5195553 |
T |
|
| Q |
394 |
ggcaataatctgttcagtggaaattttccatccttcattagtaatctcacatc |
446 |
Q |
| |
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| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
5195554 |
agtaataatctgttcagtggaaattttccatctttcattagcaatctcacatc |
5195606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 194 - 446
Target Start/End: Original strand, 5181956 - 5182212
Alignment:
| Q |
194 |
gtatatattgacgccattggaaaaactttcaagatttttatgataatgtcaatttttgtaaagatgacaggacattgttaa----ttatgacaggactat |
289 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
5181956 |
gtatatattgacgccattggaaaaacttttaagatttttatgataatgtcaatttttgtatagatgacaggacatagttaattaattatgacaggactat |
5182055 |
T |
|
| Q |
290 |
gcaatttgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaacaaacctcagagttcttga |
389 |
Q |
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|||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
5182056 |
gcaatttgaaggatttggtagaattggatatcagctataacatgtttagtgctaaacttccagagtgtttaagcaacttaacaaaccttagagttcttga |
5182155 |
T |
|
| Q |
390 |
ccttggcaataatctgttcagtggaaattttccatccttcattagtaatctcacatc |
446 |
Q |
| |
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||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
5182156 |
acttagtaataatctgttcagtggaaattttccatctttcattagcaatctcacatc |
5182212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 194 - 446
Target Start/End: Original strand, 5159709 - 5159964
Alignment:
| Q |
194 |
gtatatattgacgccattggaaaaactttcaagatttttatgataatgtcaatttttgtaaagatgacaggacattgttaa----ttatgacaggactat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
5159709 |
gtatatattgacgccattggaaaaacttt-aagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattaattatgacaggactat |
5159807 |
T |
|
| Q |
290 |
gcaatttgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaacaaacctcagagttcttga |
389 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| | ||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||| |
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| T |
5159808 |
gcaatttgaaggatttggtagaactggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaacttaacaaacctcagagttcttga |
5159907 |
T |
|
| Q |
390 |
ccttggcaataatctgttcagtggaaattttccatccttcattagtaatctcacatc |
446 |
Q |
| |
|
||| | |||||||||||||||||||| |||||||| |||||||| ||||||||||| |
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|
| T |
5159908 |
acttagtaataatctgttcagtggaaagtttccatctttcattagcaatctcacatc |
5159964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 195 - 446
Target Start/End: Original strand, 5172630 - 5172880
Alignment:
| Q |
195 |
tatatattgacgccattggaaaaactttcaagatttttatgataatgtcaatttttgtaaagatgacaggacattgttaattatgacaggactatgcaat |
294 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| |
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| T |
5172630 |
tatatattgagtccattggaaaaacttt-aagatttttatgataatgtcaatttttgtaaagataactggacatagttaattatgacaggactatgcaat |
5172728 |
T |
|
| Q |
295 |
ttgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaacaaacctcagagttcttgaccttg |
394 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||||||||| | |||||||||| || |||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
5172729 |
ttgaaggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgacctta |
5172828 |
T |
|
| Q |
395 |
gcaataatctgttcagtggaaattttccatccttcattagtaatctcacatc |
446 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5172829 |
gccataatctattcagtggaaattttccatccttcattagtaatctcacatc |
5172880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 195 - 446
Target Start/End: Complemental strand, 4842895 - 4842645
Alignment:
| Q |
195 |
tatatattgacgccattggaaaaactttcaagatttttatgataatgtcaatttttgtaaagatgacaggacattgttaattatgacaggactatgcaat |
294 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
4842895 |
tatatattgagtccattggaaaaacttt-aagatttttatgataatgttaattttttgaaagatgaccggacatagttaattatgacaggactatgcaat |
4842797 |
T |
|
| Q |
295 |
ttgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaacaaacctcagagttcttgaccttg |
394 |
Q |
| |
|
||||||||||| | |||||||||||||||| | ||||||||| | |||||||||| || |||||||| |||||||||||||||||| ||||||||||| |
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| T |
4842796 |
ttgaaggatttggaagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgacctta |
4842697 |
T |
|
| Q |
395 |
gcaataatctgttcagtggaaattttccatccttcattagtaatctcacatc |
446 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||| || ||||||||||| |
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|
| T |
4842696 |
gccataatctgttcggtggaaattttccatccttcactaccaatctcacatc |
4842645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 276 - 446
Target Start/End: Original strand, 5213602 - 5213772
Alignment:
| Q |
276 |
tatgacaggactatgcaatttgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaacaaac |
375 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| || ||||||||| |||||||||||||| | ||||||| || ||||||||||||||||||||| |
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|
| T |
5213602 |
tatgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaac |
5213701 |
T |
|
| Q |
376 |
ctcagagttcttgaccttggcaataatctgttcagtggaaattttccatccttcattagtaatctcacatc |
446 |
Q |
| |
|
|| | |||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5213702 |
ctgaatgttcttgaacttagctataatttgttcagtggaaattttccatccttcattagtaatctcacatc |
5213772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 5159532 - 5159645
Alignment:
| Q |
17 |
aaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaataattaattcataactgcttcacgggatggat |
116 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5159532 |
aaatgttaactttaagctataatcaaatgaacggctcaattgaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggat |
5159631 |
T |
|
| Q |
117 |
tgttacaatgaaga |
130 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5159632 |
tgttacaatgaaga |
5159645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 5181767 - 5181864
Alignment:
| Q |
17 |
aaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaataattaattcataactgcttcacgggatgg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5181767 |
aaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatgg |
5181864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 5195165 - 5195262
Alignment:
| Q |
17 |
aaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaataattaattcataactgcttcacgggatgg |
114 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5195165 |
aaatgttaagtttaaacgataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatgg |
5195262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 5172518 - 5172594
Alignment:
| Q |
17 |
aaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaataattaatt |
93 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
5172518 |
aaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataaataattaatt |
5172594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 4843104 - 4843028
Alignment:
| Q |
17 |
aaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaataattaatt |
93 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
4843104 |
aaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtatcaatactatcaaacataaataattaatt |
4843028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 5212744 - 5212815
Alignment:
| Q |
17 |
aaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaataat |
88 |
Q |
| |
|
||||| |||||||| | || |||||||||||||||||| |||||||||| ||| ||||||||||||||||| |
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|
| T |
5212744 |
aaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat |
5212815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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