View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8555_low_6 (Length: 378)

Name: NF8555_low_6
Description: NF8555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8555_low_6
NF8555_low_6
[»] chr3 (12 HSPs)
chr3 (103-363)||(10377847-10378107)
chr3 (108-361)||(10075126-10075377)
chr3 (103-363)||(10136676-10136932)
chr3 (103-236)||(10365502-10365635)
chr3 (103-270)||(10134041-10134208)
chr3 (107-193)||(10102219-10102305)
chr3 (107-193)||(10213142-10213228)
chr3 (103-214)||(10221242-10221353)
chr3 (239-317)||(10221351-10221429)
chr3 (10-50)||(10378160-10378200)
chr3 (233-286)||(10102324-10102377)
chr3 (233-286)||(10213247-10213300)
[»] chr4 (1 HSPs)
chr4 (155-327)||(25793598-25793770)
[»] scaffold0045 (2 HSPs)
scaffold0045 (103-222)||(85754-85873)
scaffold0045 (311-363)||(85887-85939)
[»] chr5 (2 HSPs)
chr5 (103-214)||(26816600-26816711)
chr5 (239-317)||(26816709-26816787)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 103 - 363
Target Start/End: Complemental strand, 10378107 - 10377847
Alignment:
Q  103 gtccaaatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttatcttgctggt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378107 gtccaaatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttatcttgctggt 10378008  T
Q  203 actgttatgttgatttttggtttgggcttatatggattgttcattagcaacacacctcatgatatgtcaccttctgttgaccgtgcgcttaaagggtcct 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378007 actgttatgttgatttttggtttgggcttatatggattgttcattagcaacacacctcatgatatgtcaccttctgttgaccgtgcgcttaaagggtcct 10377908  T
Q  303 ctctcttcggaatgttcgctttgaaagctattataaaccctataatcatgtagggggtatg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10377907 ctctcttcggaatgttcgctttgaaagctattataaaccctataatcatgtagggggtatg 10377847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 108 - 361
Target Start/End: Original strand, 10075126 - 10075377
Alignment:
Q  108 aatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttatcttgctggtactgt 207  Q
    ||||||||||||| |||||||||||||| ||||||||||| | |||| |||||||||||||||||| |  ||||||||||||||||||||||||||||||    
T  10075126 aatttctgataagatttagtttttacttgcatttagccttctttatgacaataaaataaatgaatcttgctgctgcagatgtttatcttgctggtactgt 10075225  T
Q  208 tatgttgatttttggtttgggcttatatggattgttcattagcaacacacctcatgatatgtcaccttctgttgaccgtgcgcttaaagggtcctctctc 307  Q
    |||||||||||||    |||| |||||||||||||| || ||||||| ||||||||| || |||| |||||| |||||| | |||||||| |||||||||    
T  10075226 tatgttgatttttataatgggtttatatggattgtttatcagcaacatacctcatgacatttcacgttctgtggaccgttcccttaaaggatcctctctc 10075325  T
Q  308 ttcggaatgttcgctttgaaagctattataaaccctataatcatgtagggggta 361  Q
    |  |||||||| |||||||| |  ||  ||||||||||| ||||||||||||||    
T  10075326 t--ggaatgtttgctttgaaggtaatcgtaaaccctatattcatgtagggggta 10075377  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 103 - 363
Target Start/End: Original strand, 10136676 - 10136932
Alignment:
Q  103 gtccaaatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttatcttgctggt 202  Q
    |||||||||||||||| | ||||||||||||||||||| | |||| | |||| |||||||||||||||||| |  |||||||||||||||||||||||||    
T  10136676 gtccaaatttctgatatgatttagtttttacttacattcatccttctttatgacaataaaataaatgaatcttgctgctgcagatgtttatcttgctggt 10136775  T
Q  203 actgttatgttgatttttggtttgggcttatatggattgttcattagcaacacacctcatgatatgtcaccttctgttgaccgtgcgcttaaagggtcct 302  Q
    || |||||||||||||||||  || |  ||||||||||||| || | |||| | |||||||| |||||||||||||| ||||||||   |    | ||||    
T  10136776 accgttatgttgatttttggaatgcgtatatatggattgtttatcaccaacgcgcctcatgacatgtcaccttctgtggaccgtgcctct----gatcct 10136871  T
Q  303 ctctcttcggaatgttcgctttgaaagctattataaaccctataatcatgtagggggtatg 363  Q
    ||||||| |||||||| |||||||| |  || ||||||||||| ||||||||||| |||||    
T  10136872 ctctctttggaatgtttgctttgaaggtaatcataaaccctattatcatgtagggagtatg 10136932  T

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Target: chr3; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 10365635 - 10365502
Alignment:
Q  103 gtccaaatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttatcttgctggt 202  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||| ||| |||||||||| | | ||||||||||||||||||||||||    
T  10365635 gtccaaatttctgataagatttagtttttactgacatttagccttctctatgacaaaaaattaaatgaatcttgtagctgcagatgtttatcttgctggt 10365536  T
Q  203 actgttatgttgatttttggtttgggcttatatg 236  Q
    ||||||||||||||||||||| ||||||||||||    
T  10365535 actgttatgttgatttttggtatgggcttatatg 10365502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 103 - 270
Target Start/End: Original strand, 10134041 - 10134208
Alignment:
Q  103 gtccaaatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttatcttgctggt 202  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||| | |||| ||||||||||||||| || | ||||||||||||||||||||||||||    
T  10134041 gtccaaatttctgataagatttagttttgactgacatttagccttctttatgacaataaaataaatgagtcttgttgctgcagatgtttatcttgctggt 10134140  T
Q  203 actgttatgttgatttttggtttgggcttatatggattgttcattagcaacacacctcatgatatgtc 270  Q
    ||  ||||||||||||| ||  ||  ||| ||||||||||| || ||||||||||||||||| |||||    
T  10134141 accattatgttgattttcggaatgttcttttatggattgtttatcagcaacacacctcatgacatgtc 10134208  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 10102219 - 10102305
Alignment:
Q  107 aaatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttat 193  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||| |  ||||||||||||||||    
T  10102219 aaatttctgataagctttagtttttacttacatttagccttctttatgacaataaaataaatgaatcttgctgctgcagatgtttat 10102305  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 10213142 - 10213228
Alignment:
Q  107 aaatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttat 193  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||| |  ||||||||||||||||    
T  10213142 aaatttctgataagctttagtttttacttacatttagccttctttatgacaataaaataaatgaatcttgctgctgcagatgtttat 10213228  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 10221242 - 10221353
Alignment:
Q  103 gtccaaatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttatcttgctggt 202  Q
    |||||||||||||||||| ||||||||||||||||||||||| || | |||| || ||||||||||||| | |  ||||||| |||||||||||||  ||    
T  10221242 gtccaaatttctgataagatttagtttttacttacatttagctttctttatgacagtaaaataaatgaaacttgctgctgcatatgtttatcttgccagt 10221341  T
Q  203 actgttatgttg 214  Q
    ||| ||||||||    
T  10221342 actcttatgttg 10221353  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 10221351 - 10221429
Alignment:
Q  239 ttgttcattagcaacacacctcatgatatgtcaccttctgttgaccgtgcgcttaaagggtcctctctcttcggaatgt 317  Q
    |||||||| | |||||||||||||||| ||||| ||||||| |||||||| |||||||| |||||||||||||||||||    
T  10221351 ttgttcatcaacaacacacctcatgatgtgtcagcttctgtcgaccgtgcccttaaaggatcctctctcttcggaatgt 10221429  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 10378200 - 10378160
Alignment:
Q  10 attattctccatcattatctaaacaaagaacatgaaaataa 50  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10378200 attattctccatcattatctaaacaaagaacatgaaaataa 10378160  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 10102324 - 10102377
Alignment:
Q  233 tatggattgttcattagcaacacacctcatgatatgtcaccttctgttgaccgt 286  Q
    ||||||||||| || |||||| | |||||||| |||||||||||||| ||||||    
T  10102324 tatggattgtttatcagcaacgcgcctcatgacatgtcaccttctgtggaccgt 10102377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 10213247 - 10213300
Alignment:
Q  233 tatggattgttcattagcaacacacctcatgatatgtcaccttctgttgaccgt 286  Q
    ||||||||||| || |||||| | |||||||| |||||||||||||| ||||||    
T  10213247 tatggattgtttatcagcaacgcgcctcatgacatgtcaccttctgtggaccgt 10213300  T

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Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 155 - 327
Target Start/End: Original strand, 25793598 - 25793770
Alignment:
Q  155 tcaataaaataaatgaatcctattgctgcagatgtttatcttgctggtactgttatgttgatttttggtttgggcttatatggattgttcattagcaaca 254  Q
    ||||||||||  ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  25793598 tcaataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgttcatcagcaaca 25793697  T
Q  255 cacctcatgatatgtcaccttctgttgaccgtgcgcttaaagggtcctctctcttcggaatgttcgctttgaa 327  Q
    ||||||||||| ||  |||| |||| |||||||| |||||||| ||||||||||| |||||||||||||||||    
T  25793698 cacctcatgatgtgcaacctgctgtcgaccgtgcccttaaaggatcctctctctttggaatgttcgctttgaa 25793770  T

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Target: scaffold0045 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 85754 - 85873
Alignment:
Q  103 gtccaaatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttatcttgctggt 202  Q
    |||||||||||||||||| ||||||||||||||||||| | |||| | |||| |||||||||||||||||| |  ||||||| |||||||||||||||||    
T  85754 gtccaaatttctgataagatttagtttttacttacattcatccttctttatgacaataaaataaatgaatcttgctgctgcaaatgtttatcttgctggt 85853  T
Q  203 actgttatgttgatttttgg 222  Q
    || |||||||||||||||||    
T  85854 accgttatgttgatttttgg 85873  T

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Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 85887 - 85939
Alignment:
Q  311 ggaatgttcgctttgaaagctattataaaccctataatcatgtagggggtatg 363  Q
    |||||||| |||||||| |  || |||||||||||||| ||||||||||||||    
T  85887 ggaatgtttgctttgaaggtaatcataaaccctataattatgtagggggtatg 85939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 26816600 - 26816711
Alignment:
Q  103 gtccaaatttctgataaggtttagtttttacttacatttagccttatctatgtcaataaaataaatgaatcctattgctgcagatgtttatcttgctggt 202  Q
    |||||||||||||||||| ||||||||||||||||||||||| || | |||| || ||||||||||||| | |  ||||||| |||||||||||||  ||    
T  26816600 gtccaaatttctgataagatttagtttttacttacatttagctttctttatgacagtaaaataaatgaaacttgctgctgcatatgtttatcttgccagt 26816699  T
Q  203 actgttatgttg 214  Q
    ||| ||||||||    
T  26816700 actcttatgttg 26816711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 26816709 - 26816787
Alignment:
Q  239 ttgttcattagcaacacacctcatgatatgtcaccttctgttgaccgtgcgcttaaagggtcctctctcttcggaatgt 317  Q
    |||||||| | |||||||||||||||| ||||| ||||||| |||||||| |||||||| |||||||||||||||||||    
T  26816709 ttgttcatcaacaacacacctcatgatgtgtcagcttctgtcgaccgtgcccttaaaggatcctctctcttcggaatgt 26816787  T

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