View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8555_low_7 (Length: 364)
Name: NF8555_low_7
Description: NF8555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8555_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 26 - 347
Target Start/End: Complemental strand, 129626 - 129305
Alignment:
| Q |
26 |
ctctctagttgtacc---aaaaagaaaaagtaatacatgagggtacatcgataaaaatatggggactagtttgaaaagtgactattcatgctaaagaatg |
122 |
Q |
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| T |
129626 |
ctctctagttgtacccaaaaaaaaaaaaagtaatacatgagggtacatcgataaaaatacggggactagtttgaaaagtgactattcatgctaaagaatg |
129527 |
T |
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| Q |
123 |
agagacctcaacttattcgtttatcgctgactaaatttgacatgagagttttgaaaaattaaattacgatattgcttgcaagactccataattgcctcca |
222 |
Q |
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| T |
129526 |
agcgacctcaacttattcgtttatctctgagtaaatttgacatgagagttttgaaaaaataaattacgatattacttgcaagactccataattgcctcca |
129427 |
T |
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| Q |
223 |
agctccataatatctatgctatatgtcttaaataatcgacaactttcttcgagtctacctcaaaatcaatagtatttgctaattgtacctcattgatccg |
322 |
Q |
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| T |
129426 |
agctccgtaatatctatgctatttgtcttaaatagtcgacaactttcttcgagtctacctcaaaatcaa---tatttgctaattgtacctcattgatccg |
129330 |
T |
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| Q |
323 |
gataatagcgtgatccacaacggct |
347 |
Q |
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| T |
129329 |
gataatagcgtgatccacaacggct |
129305 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 1224303 - 1224249
Alignment:
| Q |
52 |
gtaatacatgagggtacatcgataaaaatatggggactagtttgaaaagtgacta |
106 |
Q |
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| T |
1224303 |
gtaatacatgtgggtacatcgataaagatgtgggaactagtttgagatgtgacta |
1224249 |
T |
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