View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8555_low_8 (Length: 353)
Name: NF8555_low_8
Description: NF8555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8555_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 35036273 - 35036618
Alignment:
| Q |
19 |
atatagcgatgaacgttatgtgtagaacggtaacggggaaagtttttgatggtgacgaagaagagaatcaaaggattag------------ggacttttt |
106 |
Q |
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| T |
35036273 |
atatagcgatgaacgttatgtgtagaacggtaacggggaaagtttttgatggtgacgaagaagagaatcagaggattagaaaatcctttagggacttttt |
35036372 |
T |
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| Q |
107 |
cgatctcagcggttcatttgttatatctgacatgttgcggtttttgagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagag |
206 |
Q |
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| T |
35036373 |
cgatctcagcggttcatttgttatatctgacatgttgcggttttttagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagag |
35036472 |
T |
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| Q |
207 |
ttagatgattttgttcaagtttggctcgatcaacacaaacgcaacaagaaacctgccggcaccaaacttgacttcatggatgtgctcctttcaacctttg |
306 |
Q |
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| T |
35036473 |
ttagatgattttgttcaagtttggctcgatcaacacaaacgcaacaagaaacctgccggcaccaaacttgacttcatggatgtgctcctttcaaccgttg |
35036572 |
T |
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| Q |
307 |
atgatcaagatatagatggtcgtgatgctgacaccacaatcaaagc |
352 |
Q |
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| T |
35036573 |
atgatcaagatatagatggtcgtgatgctgacaccacaatcaaagc |
35036618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 92 - 353
Target Start/End: Original strand, 35020159 - 35020414
Alignment:
| Q |
92 |
gattagggactttttcgatctcagcggttcatttgttatatctgacatgttgcggtttttgagatggttggatttggatggaaaacagaagcagatgaag |
191 |
Q |
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| T |
35020159 |
gattagagatttttttaatcttagtggttcatttgttgtttctgacatgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaag |
35020258 |
T |
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| Q |
192 |
aaaacggctaaagagttagatgattttgttcaagtttggctcgatcaacacaaacgcaacaagaaacct-gccggcaccaaacttgacttcatggatgtg |
290 |
Q |
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| T |
35020259 |
aaaacagcaaaagagttagatgactttgtttgtgtttggcttgatcagcacaaacataagaagaattctggtcgtgaacaa----gatttcatggatgtg |
35020354 |
T |
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| Q |
291 |
ctcctttcaacctttgatgatcaagatatagatggtcgtgatgctgacaccacaatcaaagcc |
353 |
Q |
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| T |
35020355 |
ctgctttcaaccgttgatg---aagatttagatggccgtgatgctgatactacaatcaaagcc |
35020414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 35044514 - 35044644
Alignment:
| Q |
117 |
ggttcatttgttatatctgacatgttgcggtttttgagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagttagatgatt |
216 |
Q |
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| T |
35044514 |
ggttcctttgttatatctgattcgttgccgtttttaagatggttggatttggatggaaaagagaaggaaatgaagaaaactgctaaagagttggatgagt |
35044613 |
T |
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| Q |
217 |
ttgttcaagtttggctcgatcaacacaaacg |
247 |
Q |
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| T |
35044614 |
ttgttcaaggttggattgatcaacacaaacg |
35044644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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