View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_high_14 (Length: 343)
Name: NF8556_high_14
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 663789 - 663473
Alignment:
| Q |
19 |
aatgactccctttcacagcttcataatacaaaacagctctgtccctaaaacgatccttaccagcaacagtaacaagcattttagaacaaccaagtagagc |
118 |
Q |
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| T |
663789 |
aatgactccttttcacagcttcataatacaaaacagctctgtccctaaaacgatccttaccagcaacagtaacaagcattttagaacaaccaagtaaagc |
663690 |
T |
|
| Q |
119 |
caaattaggtgacattggacccaatggattcacatttggatcatctattccaaaaggagcactagggtacacaaatttccaaagcaaagtagcaaattca |
218 |
Q |
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| T |
663689 |
caaattaggtgacattggacccaatggattcacatttggatcatctatcccaaaaggagcacgagggtacacaaatttccaaagcaaagtagcaaattca |
663590 |
T |
|
| Q |
219 |
tttaccttctcaaatttctcaactttttcaaaccctaatggttttgaaccccnnnnnnntgtatggttcatataagcaccaaatattttaacaccattag |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
663589 |
tttaccttctcaaatttctcaaccttttcaaaccctaatggttttgaaccccaaaaaaatgtatggttcatataagcaccaaatattttaacaccattag |
663490 |
T |
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| Q |
319 |
gtattcttgtaacacca |
335 |
Q |
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||||||||||||||||| |
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| T |
663489 |
gtattcttgtaacacca |
663473 |
T |
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