View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8556_high_19 (Length: 293)
Name: NF8556_high_19
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4338651 - 4338373
Alignment:
| Q |
1 |
agtgagagttgctataacctttcttcgttctatttctatgaatatgttatatcacatgtcaaaacccagtctctctcacagtttattgatttggagacct |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4338651 |
agtgagagttgctataacttttcttcgttctatttctatgaatatgttatatcacatatcaaaacccagtctctctcacagtttattgatttggagacct |
4338552 |
T |
|
| Q |
101 |
gaaagaaaattaaaggttgaatgcttagtaaaccattgtatgaggaaaactaataacttggcataaagaaatcttcagagtcaatcttcaggaaaagtag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
4338551 |
gaaagaaaattaaaggttgaatgcttagtaaaccattgtatgaggaaaactaataacttggcataaagaaatcttcagagtcaatcttcaggtaaactag |
4338452 |
T |
|
| Q |
201 |
aagcaattatacagatcattaagataatgaagttgccatcaatattgtgcatgctaagaatcttttgggatcttgatag |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4338451 |
aagcaattatacagatcattaagataatgaagttgtcatcaatattgtgcatgctaagaatcttttgggatcttgatag |
4338373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 4364435 - 4364317
Alignment:
| Q |
74 |
tctcacagtttattgatttggagacctgaaagaaaattaaaggttgaatg-cttagtaaa--ccattgtatgaggaaaactaataacttggcataaagaa |
170 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||| ||| | ||||||||||||| | ||||| |||||| || |
|
|
| T |
4364435 |
tctcccagtttattgctttgaagacctgaaagaaaattaaagattgaatgtcttagtaaacgccactctatgaggaaaactcaaaacttcgcataataaa |
4364336 |
T |
|
| Q |
171 |
atcttcagagtcaatcttc |
189 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
4364335 |
atcatcagagtcaatcttc |
4364317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 4318475 - 4318561
Alignment:
| Q |
81 |
gtttattgatttggagacctgaaagaaaattaaaggttgaat-gcttagtaaaccattgtatgaggaaaactaataacttggcataa |
166 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |||||| ||||||||||||| |||||||| ||||| || ||||| |||||| |
|
|
| T |
4318475 |
gtttattggtttggagacctgaaagaaaataaaagattgaatggcttagtaaaccactgtatgagaaaaaccaaaaacttagcataa |
4318561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 4347993 - 4347914
Alignment:
| Q |
70 |
tctctctcacagtttattgatttggagacctgaaagaaaattaaaggttgaat-gcttagtaaaccattgtatgaggaaa |
148 |
Q |
| |
|
|||||||| || ||||||| |||| ||||| ||||||||||||||| || ||| ||||||||||||| ||| ||| |||| |
|
|
| T |
4347993 |
tctctctctcattttattgctttgaagaccagaaagaaaattaaagattaaatggcttagtaaaccactgtttgacgaaa |
4347914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 4120912 - 4121066
Alignment:
| Q |
30 |
ctatttctatgaatatgttatatcacatgtcaaaacccagtctctctcacagtttattgatttggagacctgaaag-aaaattaaaggttgaat-gctta |
127 |
Q |
| |
|
|||||||||||||| |||| || ||||||| || |||||||||| ||||||| || || ||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
4120912 |
ctatttctatgaatttgttctagcacatgttcaataggagtctctctcgcagtttactgcgtttaagacctgaaagaaaaattaaagaatgaatagctta |
4121011 |
T |
|
| Q |
128 |
gtaaaccattgtatgaggaaaactaataacttggcataaagaaatcttcagagtc |
182 |
Q |
| |
|
|||||||| ||||| |||||| | || | ||| ||||| |||||||||||||| |
|
|
| T |
4121012 |
gtaaaccactgtatcaggaaagcaaaaagcttatcataagaaaatcttcagagtc |
4121066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University