View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_high_2 (Length: 629)
Name: NF8556_high_2
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Original strand, 22990273 - 22990870
Alignment:
| Q |
18 |
acatcactcatataggcaacaagtataatataattaccatcgaattcaccgacagcttgaaaaaga-tttgtcccaaatttaagcatgctgttcaaacag |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22990273 |
acataactcatataggcaacaagtataatataattaccatcgaattcaccaacagcttgaaaaagaatttgtcccaaatttaagcatgctgttcaaacaa |
22990372 |
T |
|
| Q |
117 |
gtgggcatctgtggctgatgatccattccaagcaaagtcctcgtgttaattgcttctccattgacgagaaaattcacttgctgagggtttatcaggcatg |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||| |
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| T |
22990373 |
gtgggcatctgtggctgatggtccattccaagcaaagtcctcgtgttaattgcttctccattcacgagaaaattcacatcctgagggtttatcaagcatg |
22990472 |
T |
|
| Q |
217 |
cagatgtctcaatatcctcggtttttgccaccaataaccaaattttgctat-cggactgatgattactcttttgtatattgaagtcaacaacagaagctc |
315 |
Q |
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||||||||||||||| || |||| ||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22990473 |
cagatgtctcaatattatcagtttctgccaccaataaccaaaattttttattcggactgatgatttttcttttgtatattgaagtcaacaacagaagctc |
22990572 |
T |
|
| Q |
316 |
caaatccagacttggcttcgattgaagcaataattggacccagtttcatacttggatagaatctttgcattatcatatttaataatgatgaagaatggtg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22990573 |
caaatccagacttggcttcgattgaagcaataattggacccagtttcatacttggatagaatctttgcattatcatatttaataatgatgaagaatggtg |
22990672 |
T |
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| Q |
416 |
agaaaaacttggtccggtacttcccagggtgcagtacatcttttctatctcgtgagcaatagatagaagttcttctaactctttgttctcgaaccatcca |
515 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |
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| T |
22990673 |
agaaaaactaggtctggtacttcccagggtgcagtacatcttttctatctcgtgagcaatagttagaagttcttgtgtctctttgttctcgaaccatcca |
22990772 |
T |
|
| Q |
516 |
aattcacaggcattcttcacagttatcaccaaaactatcaaaactcctagtttatcatcactcttgttttgatagtctatctttttcatcaacgtatg |
613 |
Q |
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| T |
22990773 |
aattcacaggcattcttcacagttatcaccaaaactatcacaactcctagttcatcatcactctcgttttgatagtctatctttttcatcaacgtatg |
22990870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 2538189 - 2538112
Alignment:
| Q |
53 |
accatcgaattcaccgacagcttgaaaaagatttgtcccaaatttaagcatgctgttcaaacaggtgggcatctgtgg |
130 |
Q |
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| T |
2538189 |
accatcgaactgacccacagcttgaagaagatttgtcccaaatttaaggataccagtcacacaggtgggcatctgtgg |
2538112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 2538310 - 2538281
Alignment:
| Q |
22 |
cactcatataggcaacaagtataatataat |
51 |
Q |
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| T |
2538310 |
cactcatataggcaacaagtataatataat |
2538281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 49516885 - 49516792
Alignment:
| Q |
96 |
ttaagcatgctgttcaaacaggtgggcatctgtggctgatgatccattccaagcaaagtcctcgtgttaattgcttctccattgacgagaaaat |
189 |
Q |
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|||||||| || |||| ||| |||| ||||||||| ||||||||||| |||| |||||| |||||||||| || |||||| | |||||||| |
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| T |
49516885 |
ttaagcatactattcacacaagtggtcatctgtggtccatgatccattcaaagcttagtccttgtgttaattgtttttccattcatgagaaaat |
49516792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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