View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_high_21 (Length: 286)
Name: NF8556_high_21
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 35212622 - 35212360
Alignment:
| Q |
8 |
tgagatgaatggtagagtccaacctaagaggaaaataatttgagagaaatattgattacttggaattgatagaatggcagaaagttgataacaaggagtg |
107 |
Q |
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| T |
35212622 |
tgagaagaatggtagagtccaacctaagaggaaaataatttgagagaaatattgattacttggaattgatagaatgacagaaagttgataacaaggagtg |
35212523 |
T |
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| Q |
108 |
tagtgtatactatacacttaatatggtgatcataactaagttaacaaataattaatactaagttactaaccaaccttttaagttgaaactacctataaca |
207 |
Q |
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| T |
35212522 |
tagtgtatactatacacttaatatggtgatcataactaagttaacaaataattaatactaagttactaaccaacc-tttaagttgaaactacctataaca |
35212424 |
T |
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| Q |
208 |
aacttaactaattctaacaaatctcagactatatcttacag-ttacaaatgacttactattatg |
270 |
Q |
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| T |
35212423 |
aacttaactaattctaacaaatctcagactatatcttacagtttacaaatgacttactattatg |
35212360 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 11708318 - 11708361
Alignment:
| Q |
40 |
aaataatttgagagaaatattgattacttggaattgatagaatg |
83 |
Q |
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| T |
11708318 |
aaataaattgagagaaagattgattatttggaattgatagaatg |
11708361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 45518837 - 45518887
Alignment:
| Q |
33 |
aagaggaaaataatttgagagaaatattgattacttggaattgatagaatg |
83 |
Q |
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| T |
45518837 |
aagagaaaaataaattgagagaaagattgattatttgaaattgatagaatg |
45518887 |
T |
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