View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_high_22 (Length: 278)
Name: NF8556_high_22
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 261
Target Start/End: Complemental strand, 17951663 - 17951407
Alignment:
| Q |
4 |
acctgaatgaaaccattaactaacttgtatacaaacttacaattcaacaaaaacattacaacaagtgatacaatattataatggcttttggctctgtttg |
103 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
17951663 |
acctgaatgaaaccattaactaacttgtatccaaacttacaattcaacaaaaacattacaacaagtgatacattaatataatggcttttggctctgtttg |
17951564 |
T |
|
| Q |
104 |
gtaaattatatcaacgatttccatagcagtataggatcttccacatacataatcacctgacaaaatatgaagcaagcaaattgggtataagttatgcata |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
17951563 |
gtaaattatatcaacgatttccatagcagtataggatcttccacatacataatcacctgacaaaatatcaagcaagcaaatt-ggtataagttatgcata |
17951465 |
T |
|
| Q |
204 |
gaattacaaaataaagaaaaatactctatatcgtgatcaattcaacttaaagtaggtt |
261 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17951464 |
gaattataaaataaagaaaaatactctatatcgtgatcaattcaacttaaagtaggtt |
17951407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 91 - 261
Target Start/End: Complemental strand, 18110182 - 18110014
Alignment:
| Q |
91 |
ttggctctgtttggtaaattatatcaacgatttccatagcagtataggatcttccacatacataatcacctgacaaaatatgaagcaagcaaattgggta |
190 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| || |
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| T |
18110182 |
ttggctctgtttgaaaaattatatcaacgatttgcatagcagtgtaggatcttccacatacataatcacttgacaaaatatgaagcaaacaaattggata |
18110083 |
T |
|
| Q |
191 |
taagttatgcatagaattacaaaataaagaaaaatactctatatcgtgatcaattcaacttaaagtaggtt |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |
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| T |
18110082 |
taagttatgcatagaattacaaaataaagaaaaatactc--tatcatgatcaattcaacttaaattaggtt |
18110014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 19401598 - 19401377
Alignment:
| Q |
2 |
caacctgaatgaaaccattaactaacttgtatacaaacttacaattcaacaaaaacattacaacaagtgatacaatattataatggcttttggctctgtt |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||| |||||||||||| ||||| || ||| ||||||||||| |
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| T |
19401598 |
caacctgaatgaaaccagtaactaacttgtataaaaaattacaattcaagaaaaaaattacaacaagtaatacagtaacata-------ttggctctgtt |
19401506 |
T |
|
| Q |
102 |
tggtaaattatatcaacgatttccatagcagtataggatcttccacatacataatcacctgacaaaatatgaagcaagcaaattgggtataagttatgca |
201 |
Q |
| |
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||| |||||||||||| ||||| |||| || | |||||||||||||| ||||||||||||| |||||||||||||| |||| ||| || |||||||||| |
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| T |
19401505 |
tggaaaattatatcaaagatttgcataacaatgcaggatcttccacatgcataatcacctgataaaatatgaagcaaacaaaatggataaaagttatgca |
19401406 |
T |
|
| Q |
202 |
tagaattacaaaataaagaaaaatactct |
230 |
Q |
| |
|
||||||||||||||||| ||||||||||| |
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| T |
19401405 |
tagaattacaaaataaacaaaaatactct |
19401377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 18017808 - 18017677
Alignment:
| Q |
93 |
ggctctgtttggtaaattatatcaacgatttccatagcagtataggatcttccacatacataatcacctgacaaaatatgaagcaagcaaattgggtata |
192 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || | |||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||| |
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| T |
18017808 |
ggctctgtttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatata |
18017709 |
T |
|
| Q |
193 |
agttatgcatagaattacaaaataaagaaaaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
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| T |
18017708 |
agttatgcatagaattacaaaataaacaaaaa |
18017677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 19353232 - 19353020
Alignment:
| Q |
1 |
acaacctgaatgaaaccattaactaacttgtatacaaacttacaattcaacaaaaacattacaacaagtgatacaatattataatggcttttggctctgt |
100 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| | || ||| || || |||||||||| |
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| T |
19353232 |
acaacctgaatgaaaccattatttaaattgtataaaaacttacaattcaacaaaaacattacaacaagtgataaagtaacatattgactcttggctctgt |
19353133 |
T |
|
| Q |
101 |
ttggtaaattatatcaacgatttccatagcagtataggatcttccacatacataatcacctgacaaaatatgaagcaagcaaattgggtataagttatgc |
200 |
Q |
| |
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| || |||||||| || ||| | |||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||| |
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| T |
19353132 |
t-ggaaaattata--------------ag-agtgcatgatcttccacatacataatcacctgataaaatatgaagcaaacaaaatgtatataagttatgc |
19353049 |
T |
|
| Q |
201 |
atagaattacaaaataaagaaaaatactc |
229 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |
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| T |
19353048 |
atagaattacaaaattaagcaaaatactc |
19353020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 18110289 - 18110220
Alignment:
| Q |
5 |
cctgaatgaaaccattaactaacttgtatacaaacttacaattcaacaaaaacattacaacaagtgatac |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18110289 |
cctgaatgaaaccattaactaacttgtataaaaacttacaattcaacaaaaacattacaacaagtgatac |
18110220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 16679071 - 16679007
Alignment:
| Q |
138 |
gatcttccacatacataatcacctgacaaaatatgaagcaagcaaattgggtataagttatgcat |
202 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||| || ||| |||||||||||||| |
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| T |
16679071 |
gatcttccacatgcataatcacctgagaaaatatgaagcaaatgaaatggatataagttatgcat |
16679007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 19458695 - 19458617
Alignment:
| Q |
91 |
ttggctctgtttggtaaattatatcaacgatttccatagcagtataggatcttccacatacataatcacctgacaaaat |
169 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| |||| ||| ||||||||||||| | |||||||||||| ||||| |
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|
| T |
19458695 |
ttggctctgtttggaaaattatatccatgatttgcataacagcgcaggatcttccacaaatataatcacctgataaaat |
19458617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 18017646 - 18017610
Alignment:
| Q |
221 |
aaaatactctatatcgtgatcaattcaacttaaagta |
257 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18017646 |
aaaatactctatatcatgatcaattcaacttaaagta |
18017610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 17725795 - 17725878
Alignment:
| Q |
91 |
ttggctctgtttggtaaattatatcaacgatttccatagcagtataggatcttccacatacataatcacctgacaaaatatgaa |
174 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||| ||| |||| ||| ||| ||||| | |||||||||||| |||||||||| |
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|
| T |
17725795 |
ttggctcagtttggaaaattatatccacgatttgaataacagtgcaggttctgccacaaatataatcacctgataaaatatgaa |
17725878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 19027024 - 19027107
Alignment:
| Q |
91 |
ttggctctgtttggtaaattatatcaacgatttccatagcagtataggatcttccacatacataatcacctgacaaaatatgaa |
174 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||| ||| |||| ||| ||| ||||| | |||||||||||| |||||||||| |
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|
| T |
19027024 |
ttggctcagtttggaaaattatatccacgatttgaataacagtgcaggttctgccacaaatataatcacctgataaaatatgaa |
19027107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 19335673 - 19335628
Alignment:
| Q |
187 |
ggtataagttatgcatagaattacaaaataaagaaaaatactctata |
233 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||||||||| |
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|
| T |
19335673 |
ggtataagttttgcatagaattacaaaataaa-acaaatactctata |
19335628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 8461327 - 8461232
Alignment:
| Q |
136 |
aggatcttccacatacataatc-acctgacaaaatatgaagcaagcaaattgggtataagttatgcatagaattacaaaataaagaaaaatactct |
230 |
Q |
| |
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||||||| |||||| ||||||| |||||| |||||| ||||||| |||| | | |||||||||||||||||||||||||| ||| |||||||||| |
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| T |
8461327 |
aggatctgccacatgcataatccacctgataaaatacgaagcaaacaaaatagacataagttatgcatagaattacaaaatcaagcaaaatactct |
8461232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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