View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8556_high_26 (Length: 250)
Name: NF8556_high_26
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_high_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11390922 - 11391155
Alignment:
| Q |
1 |
tgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgattgaattgtgcaatgaaatttgtagagatggaaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
11390922 |
tgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgatagaattgtgcaatgaaatttgtagagatggaacaat |
11391021 |
T |
|
| Q |
101 |
gcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgtgttgctaaaagagaaatctccaaaaaacttttttatcatagaatttgtctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11391022 |
gcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgtgttgctaaaagagaaatctccaaaaaacttttttatcatagaatttgtctc |
11391121 |
T |
|
| Q |
201 |
aatatgggacaatatttttcttttcagtttatta |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
11391122 |
aatatgggacaatatttttcttttcagattatta |
11391155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 11419702 - 11419508
Alignment:
| Q |
1 |
tgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgattgaattgtgcaatgaaatttgtagagatggaaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
|
|
| T |
11419702 |
tgaagatatgtaccggaaccggatactcggagaaggagttaagatcgtgtgctatggttatgatagaattctgcaatgaaatttgtagagatggaacaat |
11419603 |
T |
|
| Q |
101 |
gcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgtgttgctaaaagagaaatctccaaaaaacttttttatcatagaattt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11419602 |
gcatgtttttaggaaattttcaagtcgagattattgtgaggttgcatgttttgctaaaagagaaatctccaaaaaacttttttatcctagaattt |
11419508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 23693424 - 23693492
Alignment:
| Q |
57 |
gttatgattgaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
125 |
Q |
| |
|
|||||||| |||| ||||| | |||||||| |||| |||| |||| | ||||||| ||||||||||||| |
|
|
| T |
23693424 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23693492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 23711864 - 23711932
Alignment:
| Q |
57 |
gttatgattgaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
125 |
Q |
| |
|
|||||||| |||| ||||| | |||||||| |||| |||| |||| | ||||||| ||||||||||||| |
|
|
| T |
23711864 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23711932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 23730320 - 23730388
Alignment:
| Q |
57 |
gttatgattgaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
125 |
Q |
| |
|
|||||||| |||| ||||| | |||||||| |||| |||| |||| | ||||||| ||||||||||||| |
|
|
| T |
23730320 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23730388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 23748775 - 23748843
Alignment:
| Q |
57 |
gttatgattgaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
125 |
Q |
| |
|
|||||||| |||| ||||| | |||||||| |||| |||| |||| | ||||||| ||||||||||||| |
|
|
| T |
23748775 |
gttatgatggaatcgtgcattcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagt |
23748843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 24108802 - 24108734
Alignment:
| Q |
57 |
gttatgattgaattgtgcaatgaaatttgtagagatggaaccatgcatgtttttaggaaattttcaagt |
125 |
Q |
| |
|
|||||||| || | ||||| | ||||||||||||||||| |||| | ||||||| ||||||||||||| |
|
|
| T |
24108802 |
gttatgatggattcgtgcattcaaatttgtagagatggatacatggaagtttttaagaaattttcaagt |
24108734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University