View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_high_29 (Length: 241)
Name: NF8556_high_29
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_high_29 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 41623570 - 41623346
Alignment:
| Q |
17 |
cagcaccggcgcaggcgccggaatcaacaccacaaccaccaccccccattccgatcctccacccaaaaacgccccaacaatcctcccacaaaacttcact |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623570 |
cagcaccggcgccggcgccggaatcaacaccacaaccaccaccccccattccgatcctccacccaaaaacgccccaacaatcctcccacaaaacttcact |
41623471 |
T |
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| Q |
117 |
ccctcaccccctcaaccacccttacccaccaccaccttcggccgcatcctcaaccgtccaatggaagacgttcgctccatcttcatcttcggccgcgaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41623470 |
ccctcaccccctcaaccacccttacccaccaccaccctcggccgcatcctgaaccgtccaatggaagacgttcgctccatcttcatcttcggccgtgaac |
41623371 |
T |
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| Q |
217 |
tcggccgaggccaattcggcgttac |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
41623370 |
tcggccgaggccaattcggcgttac |
41623346 |
T |
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