View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_high_5 (Length: 441)
Name: NF8556_high_5
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 1055274 - 1055706
Alignment:
| Q |
1 |
catctcttccttcttcatctcaccctctcaagctcaccgttaccgtcacactttccgtttccgttccactaacgacgttaacctcactcttctccccatg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1055274 |
catctcctccttcttcatctcaccctctcaagctcaccgttaccgtcacactttccgtttccgttccactaacgacgttaacctcactcttctccccacg |
1055373 |
T |
|
| Q |
101 |
cgcactcaattcaattatccaccacgcgttcaacaacactccacaactccttctcctcctccgccggaagaaaagaaatccttcgccgttgccaccggcg |
200 |
Q |
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| T |
1055374 |
cgcactcaattcaattatccaccacgcgttcaacaacactccacaactccttctcctcctccgccggaagaaaagaaatccttcgccgttgccaccggcg |
1055473 |
T |
|
| Q |
201 |
agcttttcttaggtatagcttcacgtctcatcaacagccgcgaatcgactccggtggtgatgttcgagaattcgaattcgaactcaacggtaatgtacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1055474 |
agcttttcttaggtatagcttcacgtctcatcaacagccgcgaatcgactccggtggtgatgttcgagaattcgaattcgaactcaacggtaatgtacga |
1055573 |
T |
|
| Q |
301 |
tgagaaagagagaattggtgctgttatgaaagatgagattcaatctgatgtgatttgggaacagagagtgaaagatattgaagcggaacggagtagaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1055574 |
tgagaaagagagaattggtgctgttatgaaagatgagattcaatctgatgtgatttgggaacagagagtgaaagatattgaagcggaacggagtagaaga |
1055673 |
T |
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| Q |
401 |
gttgtaactactcctggttttagtttctctgct |
433 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1055674 |
gttgtaactactcctggttttagtttctctgct |
1055706 |
T |
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