View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8556_high_7 (Length: 400)

Name: NF8556_high_7
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8556_high_7
NF8556_high_7
[»] chr5 (4 HSPs)
chr5 (27-264)||(3627184-3627425)
chr5 (243-364)||(16087983-16088103)
chr5 (260-322)||(3627780-3627842)
chr5 (244-364)||(16085061-16085180)
[»] chr2 (3 HSPs)
chr2 (246-364)||(26973302-26973420)
chr2 (238-364)||(7504935-7505061)
chr2 (244-364)||(26968772-26968892)
[»] chr4 (2 HSPs)
chr4 (243-364)||(14059095-14059216)
chr4 (243-364)||(23544728-23544849)
[»] chr3 (2 HSPs)
chr3 (244-349)||(53726677-53726782)
chr3 (243-349)||(53731158-53731264)
[»] chr6 (1 HSPs)
chr6 (277-364)||(19229541-19229628)
[»] chr8 (5 HSPs)
chr8 (244-364)||(8263528-8263647)
chr8 (257-362)||(21419000-21419105)
chr8 (259-364)||(38643623-38643719)
chr8 (299-349)||(32791873-32791923)
chr8 (243-364)||(5659728-5659848)
[»] chr1 (1 HSPs)
chr1 (243-364)||(19033617-19033737)
[»] scaffold0427 (1 HSPs)
scaffold0427 (331-364)||(5844-5877)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 264
Target Start/End: Original strand, 3627184 - 3627425
Alignment:
Q  27 tttggtgttacttgcaggtttgcttttgaatcttggccgcatgtttttaatcggatgcacgggggttaaaatttcatggggtcattttcactgtactttg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      
T  3627184 tttggtgttacttgcaggtttgcttttgaatcttggccgcatgtttttaatcggatgcacgggggttaaaatttcatgggctcattttcactgtactt-- 3627281  T
Q  127 tgctttttcactcattactttttaagagggtcattaattaagcactccacaaatttattaaccat------cttggttggattggtttcaattttttcta 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||| |||||||||||||    
T  3627282 tgctttttcactcattactttttaagagggtcattaattaagcactccacaaatttattaaccatcattcccttggttggattggtatcaattttttcta 3627381  T
Q  221 tcgttacatttcaaccataagcttgttgtagctgatgtgtaaac 264  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  3627382 tcgttacatttcaaccataagcttgttgtacctcatgtgtaaac 3627425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 364
Target Start/End: Original strand, 16087983 - 16088103
Alignment:
Q  243 ttgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttca 342  Q
    |||||||| |||||| |||||||||||| |||||||||||| || || ||||||| | ||||||| | |||| |||||||  ||| |||||||||||||     
T  16087983 ttgttgtacctgatgcgtaaacagtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcg 16088081  T
Q  343 aataacaacgaactagattctg 364  Q
    | ||||||| ||| ||||||||    
T  16088082 agtaacaacaaaccagattctg 16088103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 3627780 - 3627842
Alignment:
Q  260 taaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataaca 322  Q
    ||||||||||| |||||||||||| ||||| |||||||| |||||||| |||||| |||||||    
T  3627780 taaacagtaaccgcaacaccgcaactttaaataataacgtagcaaccgcaacttcaaataaca 3627842  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 364
Target Start/End: Original strand, 16085061 - 16085180
Alignment:
Q  244 tgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttcaa 343  Q
    ||||||| |||||| |||||||||||| |||||||| ||| || || ||||||  | ||||||| | |||| |||||||  ||| ||||||||| ||| |    
T  16085061 tgttgtacctgatgcgtaaacagtaaccgcaacaccacaacttcaaataataa-tcggcaaccgcatcttcaaataacaacgcagccaccgcaatttcga 16085159  T
Q  344 ataacaacgaactagattctg 364  Q
     ||||||| ||| ||||||||    
T  16085160 gtaacaacaaaccagattctg 16085180  T

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Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 246 - 364
Target Start/End: Original strand, 26973302 - 26973420
Alignment:
Q  246 ttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttcaaat 345  Q
    ||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||  ||| |||||||||||||||||    
T  26973302 ttgtacctgatgtgtaaacagcaaccgcaacaccgcaactttaagtaataacgcagcaaccgcaacttcgaataacaccgcagccaccgcaacttcaaat 26973401  T
Q  346 aacaacgaactagattctg 364  Q
    |||| ||||| ||||||||    
T  26973402 aacaccgaaccagattctg 26973420  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 238 - 364
Target Start/End: Original strand, 7504935 - 7505061
Alignment:
Q  238 taagcttgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaa 337  Q
    |||| |||||||| ||||||||||||||| |||   |||||||||| ||||||||||||||||||||||| ||||||||||||||  ||| |||||||||    
T  7504935 taagattgttgtacctgatgtgtaaacagcaaccataacaccgcaactttaagtaataacgcagcaaccgcaacttcgaataacaccgcagccaccgcaa 7505034  T
Q  338 cttcaaataacaacgaactagattctg 364  Q
    |||||||||||| ||||| ||||||||    
T  7505035 cttcaaataacaccgaaccagattctg 7505061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 364
Target Start/End: Original strand, 26968772 - 26968892
Alignment:
Q  244 tgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttcaa 343  Q
    ||||||| |||||| |||||||| ||| |||||||||||| ||||||||| || |||||||||| ||||| ||||||||  ||| |||||| ||||||||    
T  26968772 tgttgtacctgatgagtaaacagcaaccgcaacaccgcaactttaagtaacaatgcagcaaccgcaactttgaataacacagcagccaccggaacttcaa 26968871  T
Q  344 ataacaacgaactagattctg 364  Q
    |||||| ||||| | ||||||    
T  26968872 ataacaccgaaccatattctg 26968892  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 243 - 364
Target Start/End: Complemental strand, 14059216 - 14059095
Alignment:
Q  243 ttgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttca 342  Q
    |||||||| ||||||||||||||| |||  ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||  || ||||||||||    
T  14059216 ttgttgtacctgatgtgtaaacagcaaccacaacaccgcaactttaagtaataacgcagcaaccgcaacttcgaataacatcgcagtcatcgcaacttca 14059117  T
Q  343 aataacaacgaactagattctg 364  Q
    ||||||||||||| ||||||||    
T  14059116 aataacaacgaaccagattctg 14059095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 243 - 364
Target Start/End: Complemental strand, 23544849 - 23544728
Alignment:
Q  243 ttgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttca 342  Q
    |||||||| || |||||||||||  ||| |||||||||||| |||| |||||||||||||||||| ||||||||| ||||   || ||||| ||||||||    
T  23544849 ttgttgtaccttatgtgtaaacatcaaccgcaacaccgcaactttaggtaataacgcagcaaccgcaacttcgaacaacaccccagccaccacaacttca 23544750  T
Q  343 aataacaacgaactagattctg 364  Q
    ||||||| |||||  |||||||    
T  23544749 aataacaccgaacctgattctg 23544728  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 53726677 - 53726782
Alignment:
Q  244 tgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttcaa 343  Q
    ||||||| || |||||||||||| ||| |||||||||||| ||||||||||||| ||||||||| ||||| ||| ||||  |||||||||||||||||||    
T  53726677 tgttgtaccttatgtgtaaacagcaaccgcaacaccgcaactttaagtaataacacagcaaccgcaactttgaagaacaccgcaaccaccgcaacttcaa 53726776  T
Q  344 ataaca 349  Q
    ||||||    
T  53726777 ataaca 53726782  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 243 - 349
Target Start/End: Original strand, 53731158 - 53731264
Alignment:
Q  243 ttgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttca 342  Q
    |||||||| || |||||||||||| ||| |||||||||||| ||||||||||||| ||||||||| ||||| ||| ||||  ||| ||||||||||||||    
T  53731158 ttgttgtaccttatgtgtaaacagcaaccgcaacaccgcaactttaagtaataacacagcaaccgcaactttgaagaacaccgcagccaccgcaacttca 53731257  T
Q  343 aataaca 349  Q
    |||||||    
T  53731258 aataaca 53731264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 19229541 - 19229628
Alignment:
Q  277 accgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttcaaataacaacgaactagattctg 364  Q
    ||||||| ||||||||||||||||||||||| ||||||||| |||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  19229541 accgcaactttaagtaataacgcagcaaccgcaacttcgaagaacactgcagccaccgcaacttcaaataacaccgaaccagattctg 19229628  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 364
Target Start/End: Complemental strand, 8263647 - 8263528
Alignment:
Q  244 tgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttcaa 343  Q
    ||||||| ||||||||||||||  ||| |||||| ||||| ||||||||||||||||||||||| |||||||||||| |  ||   ||||||||||||||    
T  8263647 tgttgtacctgatgtgtaaacaacaaccgcaacatcgcaactttaagtaataacgcagcaaccgcaacttcgaataa-accgcggtcaccgcaacttcaa 8263549  T
Q  344 ataacaacgaactagattctg 364  Q
    |||||| ||||| ||||||||    
T  8263548 ataacaccgaaccagattctg 8263528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 362
Target Start/End: Original strand, 21419000 - 21419105
Alignment:
Q  257 gtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttcaaataacaacgaact 356  Q
    |||||||||| ||| |||||||| ||| ||||| |||||||||| ||| |  |||||| |||||||  ||| || ||||||||||||||||||||||||     
T  21419000 gtgtaaacagcaaccgcaacaccacaactttaaataataacgcaacaatcacaacttccaataacaacgcagccgccgcaacttcaaataacaacgaacc 21419099  T
Q  357 agattc 362  Q
    ||||||    
T  21419100 agattc 21419105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 364
Target Start/End: Original strand, 38643623 - 38643719
Alignment:
Q  259 gtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttcaaataacaacgaactag 358  Q
    |||||| | ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||         |||||||||||||||||||| ||||| ||    
T  38643623 gtaaaccgcaaccgcaacaccgcaactttaagtaataacgcagcaaccgcaacttcgaataa---------caccgcaacttcaaataacaccgaaccag 38643713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 32791923 - 32791873
Alignment:
Q  299 cagcaaccgtaacttcgaataacattgcaaccaccgcaacttcaaataaca 349  Q
    ||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  32791923 cagcaaccgcaacttcgaataacactgcagccaccgcaacttcaaataaca 32791873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 364
Target Start/End: Complemental strand, 5659848 - 5659728
Alignment:
Q  243 ttgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttca 342  Q
    |||||||| |||||| |||||||| ||| |||||||||||| || || |||||||   ||||||| |||||| |||||||  | | ||||| |||||||     
T  5659848 ttgttgtacctgatgcgtaaacagcaaccgcaacaccgcaacttcaaataataac-aggcaaccgcaacttcaaataacaacgtagccaccccaacttcg 5659750  T
Q  343 aataacaacgaactagattctg 364  Q
    || |||||||||| || |||||    
T  5659749 aaaaacaacgaaccagtttctg 5659728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 364
Target Start/End: Original strand, 19033617 - 19033737
Alignment:
Q  243 ttgttgtagctgatgtgtaaacagtaactgcaacaccgcaattttaagtaataacgcagcaaccgtaacttcgaataacattgcaaccaccgcaacttca 342  Q
    |||||||| |||||| |||||||||||| |||||||  ||| ||||| ||||| | | ||||||| |||||| |||||||  ||| |||||||||||||     
T  19033617 ttgttgtacctgatgcgtaaacagtaaccgcaacacgacaactttaaataatatc-cggcaaccgcaacttcaaataacaacgcagccaccgcaacttcg 19033715  T
Q  343 aataacaacgaactagattctg 364  Q
    | ||||||||||| ||||||||    
T  19033716 agtaacaacgaaccagattctg 19033737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 364
Target Start/End: Complemental strand, 5877 - 5844
Alignment:
Q  331 accgcaacttcaaataacaacgaactagattctg 364  Q
    ||||||||||||||||||||||||||||||||||    
T  5877 accgcaacttcaaataacaacgaactagattctg 5844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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