View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8556_low_1 (Length: 785)
Name: NF8556_low_1
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_1 |
 | |
|
| [»] scaffold0417 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0566 (1 HSPs) |
| | |
|
| [»] scaffold0056 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 604; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 16 - 768
Target Start/End: Original strand, 19975411 - 19976163
Alignment:
| Q |
16 |
catcaatatggtctgatgaatggtaatgttgagtaacaggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctc |
115 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
19975411 |
catcaatatggtctgatgactgctaatgctgagtaacaggtagcttaacgctatatgtgtgtatgtttgcaaccttagctccatggtctgcgtgcacctc |
19975510 |
T |
|
| Q |
116 |
ctgctcacatggggagaaagagcggctcatatcgaagcctcaaaatccttagaggagccaatgccagagggattatcctttgttttcgatccttgcgtgg |
215 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
19975511 |
ctgctgacatggggagaaagagcggctcgtatcgaagcctcaaaatctttagaggagccaatgccagagggattatcctttgctttccatccttgcgtgg |
19975610 |
T |
|
| Q |
216 |
actgcttctgcgaaagttcaattttttccctttattaattggaagaaccttctcttgtttgtctgannnnnnnggatgtaaccaccagcaagatgttata |
315 |
Q |
| |
|
|||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19975611 |
actgctactgtgaaagttcagttttttccctttattaattggaagaaccttctcttctttgtctgattttttcggatgtaaccaccagcaagatgttata |
19975710 |
T |
|
| Q |
316 |
ttatgtccaatacttttacagtgagagcaaaagtcaggcagacactcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcat |
415 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19975711 |
ttatgtccaatacttttacagtgagtgcaaaagtcaggcagcccctcatattcaattgccaccggaaatgcataaccttcccgttccaccataacttctt |
19975810 |
T |
|
| Q |
416 |
aaaaaaggttctcaaaaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggat |
515 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
19975811 |
aaaaaaggttctcggaaaggtctaagtccatcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaatggagttctgat |
19975910 |
T |
|
| Q |
516 |
agcccctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgt |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19975911 |
agcccctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacagccttatccaaacttgagtatgtgtttgccgttgagtatgt |
19976010 |
T |
|
| Q |
616 |
gctttaaaatcttttgtccattcaaatagacacatcacacccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaa |
715 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
19976011 |
gctttaaaatcttttgtccattcaaatagacgcatcacacccgacttcaaattgaccgtgcctaatgcccataccgctcgcaagtcttcatggttggcaa |
19976110 |
T |
|
| Q |
716 |
aagagaacttataatacccacgcccaacgaaagcatatgtcgatgtcccgctg |
768 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19976111 |
aagagaacttataatacccacgcccaacgaaagcatatgtcgatgtcccgctg |
19976163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 16 - 768
Target Start/End: Complemental strand, 21017422 - 21016670
Alignment:
| Q |
16 |
catcaatatggtctgatgaatggtaatgttgagtaacaggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctc |
115 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
21017422 |
catcaatatggtctgatgactgctaatgctgagtaacaggtagcttaacgctatatgtgtgtatgtttgcaaccttagctccatggtctgcgtgcacctc |
21017323 |
T |
|
| Q |
116 |
ctgctcacatggggagaaagagcggctcatatcgaagcctcaaaatccttagaggagccaatgccagagggattatcctttgttttcgatccttgcgtgg |
215 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
21017322 |
ctgctgacatggggagaaagagcggctcgtatcgaagcctcaaaatctttagaggagccaatgccagagggattatcctttgctttccatccttgcgtgg |
21017223 |
T |
|
| Q |
216 |
actgcttctgcgaaagttcaattttttccctttattaattggaagaaccttctcttgtttgtctgannnnnnnggatgtaaccaccagcaagatgttata |
315 |
Q |
| |
|
|||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21017222 |
actgctactgtgaaagttcagttttttccctttattaattggaagaaccttctcttctttgtctgattttttcggatgtaaccaccagcaagatgttata |
21017123 |
T |
|
| Q |
316 |
ttatgtccaatacttttacagtgagagcaaaagtcaggcagacactcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcat |
415 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21017122 |
ttatgtccaatacttttacagtgagtgcaaaagtcaggcagcccctcatattcaattgccaccggaaatgcataaccttcccgttccaccataacttctt |
21017023 |
T |
|
| Q |
416 |
aaaaaaggttctcaaaaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggat |
515 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
21017022 |
aaaaaaggttctcggaaaggtctaagtccatcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaatggagttctgat |
21016923 |
T |
|
| Q |
516 |
agcccctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgt |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21016922 |
agcccctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacagccttatccaaacttgagtatgtgtttgccgttgagtatgt |
21016823 |
T |
|
| Q |
616 |
gctttaaaatcttttgtccattcaaatagacacatcacacccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaa |
715 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
21016822 |
gctttaaaatcttttgtccattcaaatagacgcatcacacccgacttcaaattgaccgtgcctaatgcccataccgctcgcaagtcttcatggttggcaa |
21016723 |
T |
|
| Q |
716 |
aagagaacttataatacccacgcccaacgaaagcatatgtcgatgtcccgctg |
768 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21016722 |
aagagaacttataatacccacgcccaacgaaagcatatgtcgatgtcccgctg |
21016670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 95 - 752
Target Start/End: Original strand, 27860239 - 27860887
Alignment:
| Q |
95 |
tccatggtctgtgtgcacctcctgctcac-atggggagaaagagcggctcatatcgaagcctcaaaatccttagaggagccaatgccagagggattatcc |
193 |
Q |
| |
|
||||||||||| |||||||||||||| | |||||||||| |||| ||| ||| ||||||||||| | |||||||||| |||| |||||||||||| |
|
|
| T |
27860239 |
tccatggtctgcgtgcacctcctgctgatgatggggagaaggagcagcttgtattgaagcctcaaaggctgtagaggagcctatgctggagggattatcc |
27860338 |
T |
|
| Q |
194 |
tttgttttcgatccttgcgtggactgcttctgcgaaagttcaatttttt---ccctttattaattggaagaaccttctcttgttt-----gtctgannnn |
285 |
Q |
| |
|
||| |||| |||| || |||||| ||||||| |||||||||||||||| || ||||| || ||||||||||||||||||||| ||| | |
|
|
| T |
27860339 |
tttactttccatccatgtgtggaccgcttctgtgaaagttcaattttttttcccttttatcaactggaagaaccttctcttgtttaatttgtcaaatttt |
27860438 |
T |
|
| Q |
286 |
nnnggatgtaaccaccagcaagatgttatattatgtccaatacttttacagtgagagcaaaagtcaggcagacactcgtattcaatttccaccggaaatg |
385 |
Q |
| |
|
| || |||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| | |||| |
|
|
| T |
27860439 |
ttcgaatataaccaccgacaagatgttacattatgtccaatacttttacagtgagtgcaaaagtcaggcaacccctcgtattcaatttccactaggaatg |
27860538 |
T |
|
| Q |
386 |
cataaccttcccgttccaccataacttcataaaaaaggttctcaaaaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagt |
485 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | |||||| |||||||||| ||| |||||| ||||| |||||||||| ||| |||| ||||| |
|
|
| T |
27860539 |
cataaccttcatgttccaccataacttcataaaaatg-ttctcagaaaggtctaaatccaccaaaaccttggcttaatgaccaatcaacatgtttttagt |
27860637 |
T |
|
| Q |
486 |
aacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaa |
585 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||| || ||||||||||| |||| | ||||||| |
|
|
| T |
27860638 |
aacattatcaattatcaacggagttctgatagcccccactatttcatacaaggttctctctatccaatagtcatgtggcaattcgcacagtcgtatccaa |
27860737 |
T |
|
| Q |
586 |
acttgagtatgtgtttgtcgttgagtatgtgctttaaaatcttttgtccattcaaatagacacatcacacccgacttcaaattgaccgtgccaaatggcc |
685 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||| |||||||| |||||||| || ||||||||||| | ||| ||| || |
|
|
| T |
27860738 |
actt------------------gagtatgtgcgttaaaatctttcgtccatttaaatagacgcatcacactcggcttcaaattgatcatgcttgatgccc |
27860819 |
T |
|
| Q |
686 |
atactgcttgcaagtcttcatggttggcaaaagagaacttataatacccacg-cccaacgaaagcata |
752 |
Q |
| |
|
|||||||| |||||||||||| | ||| ||||| |||| |||||| | ||| ||||||||||||||| |
|
|
| T |
27860820 |
atactgctcgcaagtcttcataggtggagaaagataactcataatagcaacgccccaacgaaagcata |
27860887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 19974911 - 19975015
Alignment:
| Q |
16 |
catcaatatggtctgatgaatggtaatgttgagtaacaggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctc |
115 |
Q |
| |
|
|||||||||||||| || || ||||| |||||||| |||||||||||||||| | ||||| ||||||| | || |||||||||||||| ||||||||| |
|
|
| T |
19974911 |
catcaatatggtctattggctgctaatgctgagtaaccggtagcttaacgctatctatgtgtctgtttgctaactcaactccatggtctgcgtgcacctc |
19975010 |
T |
|
| Q |
116 |
ctgct |
120 |
Q |
| |
|
||||| |
|
|
| T |
19975011 |
ctgct |
19975015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 21017922 - 21017818
Alignment:
| Q |
16 |
catcaatatggtctgatgaatggtaatgttgagtaacaggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctc |
115 |
Q |
| |
|
|||||||||||||| || || ||||| |||||||| |||||||||||||||| | ||||| ||||||| | || |||||||||||||| ||||||||| |
|
|
| T |
21017922 |
catcaatatggtctattggctgctaatgctgagtaaccggtagcttaacgctatctatgtgtctgtttgctaactcaactccatggtctgcgtgcacctc |
21017823 |
T |
|
| Q |
116 |
ctgct |
120 |
Q |
| |
|
||||| |
|
|
| T |
21017822 |
ctgct |
21017818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 599
Target Start/End: Complemental strand, 22716244 - 22716100
Alignment:
| Q |
455 |
tggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatccaata |
554 |
Q |
| |
|
||||||| ||||||||||| | |||||| ||||| | |||||| | ||| ||||| | | ||||||||||| || | || || |||| ||||||||| |
|
|
| T |
22716244 |
tggcatagtgaccaaacaaacggttcttggtaacctgatcaatgagcaatggagtaccaaccgcccctgctatctccaataaagtcctctacatccaata |
22716145 |
T |
|
| Q |
555 |
ttcctgtggcaattcccacaaccttatccaaacttgagtatgtgt |
599 |
Q |
| |
|
||| |||||||||||||| || | ||||||||||||| |||||| |
|
|
| T |
22716144 |
ttcttgtggcaattcccataaacggatccaaacttgagcatgtgt |
22716100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 457 - 509
Target Start/End: Complemental strand, 13219374 - 13219322
Alignment:
| Q |
457 |
gcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagt |
509 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| |||||| | ||||||||| |
|
|
| T |
13219374 |
gcataatgaccaaacaaacggttcttagtaacatgatcaatgagcaacggagt |
13219322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 289 - 752
Target Start/End: Complemental strand, 5074213 - 5073749
Alignment:
| Q |
289 |
ggatgtaaccaccagcaagatgttatattatgtccaatacttttacagtgagagcaaaagtcaggcagacactcgtattcaatttccaccggaaatgcat |
388 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
5074213 |
ggatgtaaccaccagcaaaataatacattatgtccaatatgtttacagtgagtgcaaaagtcaggcaacccatcgtattcaatttccaccgaaaatgcat |
5074114 |
T |
|
| Q |
389 |
aaccttcccgttccaccataacttcataaaaaaggttctcaaaaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaac |
488 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| | ||| ||||||||| |||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
5074113 |
aaccttcctgttccaccataacttcataaaaaatgtttctacaaacgtctaagtctaacaaaaccttggcataatgaccaaacaacatgttcttagtaag |
5074014 |
T |
|
| Q |
489 |
attatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaact |
588 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||||||||| |
|
|
| T |
5074013 |
attatcaattaacaacggagtcccgatagcccccgctatttcatacaaggttctctccatccaatattcctatgggaattcccacagtcgtatccaaact |
5073914 |
T |
|
| Q |
589 |
tgagtatgtgtttgtcgttgagtatgtgctttaaaatcttttgtccattcaaatagacacatcacacccgacttcaaattgaccgtgccaaatggccata |
688 |
Q |
| |
|
||| ||||||||||| ||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| |||| ||||| |
|
|
| T |
5073913 |
tgaatatgtgtttgtggttgagtatgtgcgtttaaatcttttgttcattcaaatagacgtgtcacacccgacttcaaattgatcgtgcctaatgcccata |
5073814 |
T |
|
| Q |
689 |
ctgcttgcaagtcttcatggttggcaaaagagaacttataatacccac-gcccaacgaaagcata |
752 |
Q |
| |
|
|||| |||||||||||| | ||||||| ||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
5073813 |
ttgctcgcaagtcttcataggtggcaaacgagaactcataatagtcacaccccaacgaaagcata |
5073749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 590
Target Start/End: Original strand, 22392930 - 22393000
Alignment:
| Q |
520 |
cctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttg |
590 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||| || || | |||||||||||| ||||||||||| |
|
|
| T |
22392930 |
cctgcaatttcatacaatgtcctctccatccaatattcttgcgggagttcccacaacctaatccaaacttg |
22393000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 290 - 421
Target Start/End: Complemental strand, 10177298 - 10177168
Alignment:
| Q |
290 |
gatgtaaccaccagcaagatgttatattatgtccaatacttttacagtgagagcaaaagtcaggcagacactcgtattcaatttccaccggaaatgcata |
389 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||| |||||||| |||| |||||| || |||| | ||| |||||||| || || || |||||| | |
|
|
| T |
10177298 |
gatgtaaccataggcaagatgttaaattatggtcaatgcttttacaatgagtgcaaaattccagcagcc-ctcatattcaatctcaacggggaatgcaaa |
10177200 |
T |
|
| Q |
390 |
accttcccgttccaccataacttcataaaaaa |
421 |
Q |
| |
|
||||| | ||||||||||||||||||||||| |
|
|
| T |
10177199 |
acctttctattccaccataacttcataaaaaa |
10177168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 151; Significance: 2e-79; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 152 - 574
Target Start/End: Complemental strand, 4905 - 4482
Alignment:
| Q |
152 |
gcctcaaaatccttagaggagccaatgccagagggattatcctttgttttcgatccttgcgtggactgcttctgcgaaagttcaat-tttttccctttat |
250 |
Q |
| |
|
||||||||| | ||||||||||| ||| | ||||||||||||||| |||| |||||||| |||||||||| || |||||||||| ||||||| ||||| |
|
|
| T |
4905 |
gcctcaaaagctttagaggagcctatgtcggagggattatccttttctttccatccttgcctggactgcttatgtgaaagttcaacatttttccgtttat |
4806 |
T |
|
| Q |
251 |
taattggaagaaccttctcttgtttgtctgannnnnnnggatgtaaccaccagcaagatgttatattatgtccaatacttttacagtgagagcaaaagtc |
350 |
Q |
| |
|
|| |||||||||| | ||||||||| | ||||||||||| | |||||| || ||||||| |||||||||||||||||| |||||| || |
|
|
| T |
4805 |
caacaagaagaaccttattgtgtttgtcttaatttttcggatgtaaccatcgaaaagatgatacattatgtgcaatacttttacagtgagtgcaaaactc |
4706 |
T |
|
| Q |
351 |
aggcagacactcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaaaaggttctcaaaaaggtctaagtccttcaaa |
450 |
Q |
| |
|
|||||| | ||| |||| || ||| ||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||| |||| |
|
|
| T |
4705 |
aggcagcccctcctatttcgttgccatcggaaatgcataaccttcccgttgcaccataacttcataaaaaatgttcccggaaaggtctaagtccaccaaa |
4606 |
T |
|
| Q |
451 |
actttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatcc |
550 |
Q |
| |
|
||| | ||||||||||||||||| |||||||||||||||||||||||| |||||||| | ||||| || |||||| |||||||||||||||||||| |
|
|
| T |
4605 |
actctaacataatgaccaaacaatttgttcttagtaacattatcaattagaaacggagtcccgatagaccactctatttaatacaaggttctctccatcc |
4506 |
T |
|
| Q |
551 |
aatattcctgtggcaattcccaca |
574 |
Q |
| |
|
||||||| ||||| || ||||||| |
|
|
| T |
4505 |
aatattcttgtggaaactcccaca |
4482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 8e-57; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 431 - 735
Target Start/End: Original strand, 25188229 - 25188533
Alignment:
| Q |
431 |
aaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttc |
530 |
Q |
| |
|
|||||||||||||| || || |||||||| ||||||||||| |||||||||||||||||||| | ||||||||| || | |||||| | ||||||||| |
|
|
| T |
25188229 |
aaaggtctaagtccacaaacaccttggcatagtgaccaaacaacctgttcttagtaacattatcgactaacaacggtgtcccgatagctcttgctatttc |
25188328 |
T |
|
| Q |
531 |
atacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgtgctttaaaatctttt |
630 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |||||||| | | |||||| ||||||||||||| || |||| ||||| || ||||| || || |
|
|
| T |
25188329 |
atacaatgttctctccacccaatattcctgtggtaattcccatagtcgaatccaagcttgagtatgtgtgtgacgttttgtatgagcattaaattccttc |
25188428 |
T |
|
| Q |
631 |
gtccattcaaatagacacatcacacccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaaaagagaacttataat |
730 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||||||||| |||| | || ||||||| | |||||||||||| | | |||||| | |||| ||||| |
|
|
| T |
25188429 |
gtccattcaaatagacgcatcacactcggcttcaaattgaccatgcctagtgcccatacttcccgcaagtcttcataggtagcaaaacataactcataat |
25188528 |
T |
|
| Q |
731 |
accca |
735 |
Q |
| |
|
||||| |
|
|
| T |
25188529 |
accca |
25188533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 431 - 735
Target Start/End: Original strand, 25232185 - 25232488
Alignment:
| Q |
431 |
aaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttc |
530 |
Q |
| |
|
|||||||||||||| || || |||||||| ||||||||||| |||||||||||||||| ||| | ||| ||||| || | |||||| | ||||||||| |
|
|
| T |
25232185 |
aaaggtctaagtccacaaacaccttggcatagtgaccaaacaacctgttcttagtaacat-atcgactaaaaacggtgtcccgatagctcttgctatttc |
25232283 |
T |
|
| Q |
531 |
atacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgtgctttaaaatctttt |
630 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |||||||| | || ||| ||||||||||||| || |||| ||||| || ||||| || || |
|
|
| T |
25232284 |
atacaatgttctctccacccaatattcctgtggtaattcccatagttgaattcaagcttgagtatgtgtgtgacgttttgtatgagcattaaattcgttc |
25232383 |
T |
|
| Q |
631 |
gtccattcaaatagacacatcacacccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaaaagagaacttataat |
730 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||| |||| | || ||||||||| |||||||||||| | | |||||| |||||| ||||| |
|
|
| T |
25232384 |
gtccattcaaatagacgcatcacacccggcttcaaattgaccatgcctagtgcccatactgcccgcaagtcttcataggtagcaaaacagaactcataat |
25232483 |
T |
|
| Q |
731 |
accca |
735 |
Q |
| |
|
||||| |
|
|
| T |
25232484 |
accca |
25232488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 431 - 735
Target Start/End: Original strand, 25296343 - 25296646
Alignment:
| Q |
431 |
aaaggtctaagtccttcaaaactttggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttc |
530 |
Q |
| |
|
|||||||||||||| || || |||||||| ||||||||||| |||||||||||||||| ||| | ||| ||||| || | |||||| | ||||||||| |
|
|
| T |
25296343 |
aaaggtctaagtccacaaacaccttggcatagtgaccaaacaacctgttcttagtaacat-atcgactaaaaacggtgtcccgatagctcttgctatttc |
25296441 |
T |
|
| Q |
531 |
atacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgtgctttaaaatctttt |
630 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |||||||| | || ||| ||||||||||||| || |||| ||||| || ||||| || || |
|
|
| T |
25296442 |
atacaatgttctctccacccaatattcctgtggtaattcccatagttgaattcaagcttgagtatgtgtgtgacgttttgtatgagcattaaattcgttc |
25296541 |
T |
|
| Q |
631 |
gtccattcaaatagacacatcacacccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaaaagagaacttataat |
730 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||| |||| | || ||||||||| |||||||||||| | | |||||| |||||| ||||| |
|
|
| T |
25296542 |
gtccattcaaatagacgcatcacacccggcttcaaattgaccatgcctagtgcccatactgcccgcaagtcttcataggtagcaaaacagaactcataat |
25296641 |
T |
|
| Q |
731 |
accca |
735 |
Q |
| |
|
||||| |
|
|
| T |
25296642 |
accca |
25296646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 456 - 737
Target Start/End: Original strand, 25239972 - 25240252
Alignment:
| Q |
456 |
ggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatccaatat |
555 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || | |||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
25239972 |
ggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatttcatacaaagttctctccatccaatat |
25240071 |
T |
|
| Q |
556 |
tcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgtgctttaaaatcttttgtccattcaaatagacacatcacac |
655 |
Q |
| |
|
|||| ||| |||||||||| | |||||| || |||| |||| | |||| | ||| | ||||| |||||| |||||||||||| || |||||||| |
|
|
| T |
25240072 |
tcctatggtaattcccacagtcaaatccaagtttaagtacgtgtctaacgttttggatgaccattaaattctttt-tccattcaaatatacgcatcacac |
25240170 |
T |
|
| Q |
656 |
ccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaaaagagaacttataatacccacg |
737 |
Q |
| |
|
|| ||||||||||||| |||||| || ||||||| || |||||||| ||| | | |||||||| ||| |||||||||||| |
|
|
| T |
25240171 |
ccagcttcaaattgaccatgccaagtgcccatacttctcgcaagtctccataggtagcaaaagacaacacataatacccacg |
25240252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 456 - 737
Target Start/End: Original strand, 25304125 - 25304405
Alignment:
| Q |
456 |
ggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatccaatat |
555 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || | |||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
25304125 |
ggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatttcatacaaagttctctccatccaatat |
25304224 |
T |
|
| Q |
556 |
tcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgtgctttaaaatcttttgtccattcaaatagacacatcacac |
655 |
Q |
| |
|
|||| ||| |||||||||| | |||||| || |||| |||| | |||| | ||| | ||||| |||||| |||||||||||| || |||||||| |
|
|
| T |
25304225 |
tcctatggtaattcccacagtcaaatccaagtttaagtacgtgtctaacgttttggatgaccattaaattctttt-tccattcaaatatacgcatcacac |
25304323 |
T |
|
| Q |
656 |
ccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaaaagagaacttataatacccacg |
737 |
Q |
| |
|
|| ||||||||||||| |||||| || ||||||| || |||||||| ||| | | |||||||| ||| |||||||||||| |
|
|
| T |
25304324 |
ccagcttcaaattgaccatgccaagtgcccatacttctcgcaagtctccataggtagcaaaagacaacacataatacccacg |
25304405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 455 - 737
Target Start/End: Original strand, 25236402 - 25236684
Alignment:
| Q |
455 |
tggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatccaata |
554 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || | |||||||| ||||||||||||||| |||||| |||| |||| |
|
|
| T |
25236402 |
tggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatttcatacaaagttctcatcatcgaata |
25236501 |
T |
|
| Q |
555 |
ttcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgtgctttaaaatcttttgtccattcaaatagacacatcaca |
654 |
Q |
| |
|
||| | ||| | |||||||| | |||||| || |||| |||| | |||| | ||| | ||||| |||||| ||||| ||||||||| ||||||| |
|
|
| T |
25236502 |
ttcgtatggtatttcccacagtcaaatccaagtttaagtacgtgtctagcgttttggatgaccattaaattcttttttccatgcaaatagacgcatcaca |
25236601 |
T |
|
| Q |
655 |
cccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaaaagagaacttataatacccacg |
737 |
Q |
| |
|
|||| ||||||||||||| |||| | || ||||||| || |||||||| ||| | | | |||||| ||| ||||||||||||| |
|
|
| T |
25236602 |
cccggcttcaaattgaccatgcctagtgcccatacttctcgcaagtctccataggtagaaaaagacaacatataatacccacg |
25236684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 455 - 737
Target Start/End: Original strand, 25300562 - 25300844
Alignment:
| Q |
455 |
tggcataatgaccaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatccaata |
554 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || | |||||||| ||||||||||||||| |||||| |||| |||| |
|
|
| T |
25300562 |
tggcatagtgaccaaacaacctgttcttggtaacattatcgattaacaacggtgtcccgatagcccatgctatttcatacaaagttctcatcatcgaata |
25300661 |
T |
|
| Q |
555 |
ttcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgtgctttaaaatcttttgtccattcaaatagacacatcaca |
654 |
Q |
| |
|
||| | ||| | |||||||| | |||||| || |||| |||| | |||| | ||| | ||||| |||||| ||||| ||||||||| ||||||| |
|
|
| T |
25300662 |
ttcgtatggtatttcccacagtcaaatccaagtttaagtacgtgtctagcgttttggatgaccattaaattcttttttccatgcaaatagacgcatcaca |
25300761 |
T |
|
| Q |
655 |
cccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaaaagagaacttataatacccacg |
737 |
Q |
| |
|
|||| ||||||||||||| |||| | || ||||||| || |||||||| ||| | | | |||||| ||| ||||||||||||| |
|
|
| T |
25300762 |
cccggcttcaaattgaccatgcctagtgcccatacttctcgcaagtctccataggtagaaaaagacaacatataatacccacg |
25300844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 465 - 575
Target Start/End: Complemental strand, 38232613 - 38232503
Alignment:
| Q |
465 |
accaaacaatctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatccaatattcctgtggc |
564 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
38232613 |
accaaacaacctgttcttcgtagcattatcaattagcaaaggagttccgatagcccctgctatttcatacaaggttctctccatccaatattcttggggc |
38232514 |
T |
|
| Q |
565 |
aattcccacaa |
575 |
Q |
| |
|
| ||||||||| |
|
|
| T |
38232513 |
agttcccacaa |
38232503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 521 - 737
Target Start/End: Original strand, 25233217 - 25233426
Alignment:
| Q |
521 |
ctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgtgcttt |
620 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||| || |||||||||| | |||||| ||||||||||||| | ||| ||||| || || |
|
|
| T |
25233217 |
ctgcaatttcatacaatgttctctctatccaatattcctgcggtaattcccacagtcgaatccaagcttgagtatgtgtctaatattgtgtatgagcatt |
25233316 |
T |
|
| Q |
621 |
aaaatcttttgtccattcaaatagacacatcacacccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaaaagag |
720 |
Q |
| |
|
||| ||||||||||||| || |||||||||| ||||||||||||| |||| |||| |||||||||| |||||||||| | | ||||||||| |
|
|
| T |
25233317 |
aaattcttttgtccatt-------acgcatcacacccagcttcaaattgaccatgcctaatgcccatactgctccaaagtcttcataggtagcaaaagag |
25233409 |
T |
|
| Q |
721 |
aacttataatacccacg |
737 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
25233410 |
aactcataatacccacg |
25233426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 521 - 737
Target Start/End: Original strand, 25297377 - 25297586
Alignment:
| Q |
521 |
ctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgtgcttt |
620 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||| || |||||||||| | |||||| ||||||||||||| | ||| ||||| || || |
|
|
| T |
25297377 |
ctgcaatttcatacaatgttctctctatccaatattcctgcggtaattcccacagtcgaatccaagcttgagtatgtgtctaatattgtgtatgagcatt |
25297476 |
T |
|
| Q |
621 |
aaaatcttttgtccattcaaatagacacatcacacccgacttcaaattgaccgtgccaaatggccatactgcttgcaagtcttcatggttggcaaaagag |
720 |
Q |
| |
|
||| ||||||||||||| || |||||||||| ||||||||||||| |||| |||| |||||||||| |||||||||| | | ||||||||| |
|
|
| T |
25297477 |
aaattcttttgtccatt-------acgcatcacacccagcttcaaattgaccatgcctaatgcccatactgctccaaagtcttcataggtagcaaaagag |
25297569 |
T |
|
| Q |
721 |
aacttataatacccacg |
737 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
25297570 |
aactcataatacccacg |
25297586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 151 - 419
Target Start/End: Complemental strand, 38232909 - 38232639
Alignment:
| Q |
151 |
agcctcaaaatccttagaggagccaatgccagagggattatcctttgttttcgatccttgcgtggactgcttctgcgaaagttcaatttttt--cccttt |
248 |
Q |
| |
|
|||||||||| | || |||||||||||| | || ||||||||||| || | ||||||||| ||||||||||| || |||||||||||| |||||| |
|
|
| T |
38232909 |
agcctcaaaagctttggaggagccaatgtcggaaggattatccttcaattgccatccttgcggggactgcttctaagagtgttcaattttttttcccttt |
38232810 |
T |
|
| Q |
249 |
attaattggaagaaccttctcttgtttgtctgannnnnnnggatgtaaccaccagcaagatgttatattatgtccaatacttttacagtgagagcaaaag |
348 |
Q |
| |
|
| | | | ||||||| |||||||| ||||| || |||||||||| ||| ||| ||| |||||| ||||||||||| || || | ||||||| |
|
|
| T |
38232809 |
gtccactcggggaaccttatcttgtttctctgattttttcgggtgtaaccaccggcaggatattacattatggccaatacttttgcaatgcgtgcaaaag |
38232710 |
T |
|
| Q |
349 |
tcaggcagacactcgtattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaa |
419 |
Q |
| |
|
||||| | | || | ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
38232709 |
tcaggtaaccccttgcattcaatctccaccggaaatgcataaccttccctttccaccataatttcataaaa |
38232639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 186 - 394
Target Start/End: Original strand, 25188010 - 25188218
Alignment:
| Q |
186 |
gattatcctttgttttcgatccttgcgtggactgcttctgcgaaagttcaattttttccctttattaattggaagaaccttctcttgtttgtctgannnn |
285 |
Q |
| |
|
|||||||||||| |||| ||||||| || |||||| ||| || | ||| |||||||||||| | || | || ||| ||||||| |||||||||| |
|
|
| T |
25188010 |
gattatcctttgatttccatccttgtgtagactgcgtctaataatgctcagttttttccctttgtcaactagatgaatcttctctagtttgtctgatctg |
25188109 |
T |
|
| Q |
286 |
nnnggatgtaaccaccagcaagatgttatattatgtccaatacttttacagtgagagcaaaagtcaggcagacactcgtattcaatttccaccggaaatg |
385 |
Q |
| |
|
|||||||||||||| |||||| ||| | |||| |||||||||||||| ||| |||||| |||||||| | ||||||||||||||| | ||||||| |
|
|
| T |
25188110 |
ttcggatgtaaccaccaacaagattttacactatggccaatacttttacaatgaatgcaaaactcaggcagtccctcgtattcaatttctgctggaaatg |
25188209 |
T |
|
| Q |
386 |
cataacctt |
394 |
Q |
| |
|
||||||||| |
|
|
| T |
25188210 |
cataacctt |
25188218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 580 - 737
Target Start/End: Original strand, 25188890 - 25189040
Alignment:
| Q |
580 |
atccaaacttgagtatgtgtttgtcgttgagtatgtgctttaaaatcttttgtccattcaaatagacacatcacacccgacttcaaattgaccgtgccaa |
679 |
Q |
| |
|
|||||| ||||||||||||| || ||| ||||| || ||||| ||||||||||||| || ||||||||||||||||||||||||| |||| | |
|
|
| T |
25188890 |
atccaagcttgagtatgtgtctgatattgtgtatgagcattaaattcttttgtccatt-------acgcatcacacccgacttcaaattgaccatgccta |
25188982 |
T |
|
| Q |
680 |
atggccatactgcttgcaagtcttcatggttggcaaaagagaacttataatacccacg |
737 |
Q |
| |
|
|| |||||||||| |||| ||||||| | | ||||||||||||| |||||||||||| |
|
|
| T |
25188983 |
gtgcccatactgctcgcaattcttcataggtagcaaaagagaactcataatacccacg |
25189040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 293 - 394
Target Start/End: Original strand, 25232073 - 25232174
Alignment:
| Q |
293 |
gtaaccaccagcaagatgttatattatgtccaatacttttacagtgagagcaaaagtcaggcagacactcgtattcaatttccaccggaaatgcataacc |
392 |
Q |
| |
|
|||||||||| |||||| ||| |||||| |||||||||||||| ||| |||||| |||||||| | ||||||||||||||| | |||||||||||||| |
|
|
| T |
25232073 |
gtaaccaccaacaagattttacattatggccaatacttttacaatgaatgcaaaactcaggcagtccctcgtattcaatttctgctggaaatgcataacc |
25232172 |
T |
|
| Q |
393 |
tt |
394 |
Q |
| |
|
|| |
|
|
| T |
25232173 |
tt |
25232174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 293 - 394
Target Start/End: Original strand, 25296231 - 25296332
Alignment:
| Q |
293 |
gtaaccaccagcaagatgttatattatgtccaatacttttacagtgagagcaaaagtcaggcagacactcgtattcaatttccaccggaaatgcataacc |
392 |
Q |
| |
|
|||||||||| |||||| ||| |||||| |||||||||||||| ||| |||||| |||||||| | ||||||||||||||| | |||||||||||||| |
|
|
| T |
25296231 |
gtaaccaccaacaagattttacattatggccaatacttttacaatgaatgcaaaactcaggcagtccctcgtattcaatttctgctggaaatgcataacc |
25296330 |
T |
|
| Q |
393 |
tt |
394 |
Q |
| |
|
|| |
|
|
| T |
25296331 |
tt |
25296332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 529 - 643
Target Start/End: Complemental strand, 30413469 - 30413355
Alignment:
| Q |
529 |
tcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagtatgtgctttaaaatctt |
628 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| |||||||| |||| |||||||| ||||| || ||||||||||| || || || || |||| |
|
|
| T |
30413469 |
tcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctgagtgtgagtttgtcgttgcgtgtgcatgttgaagtctt |
30413370 |
T |
|
| Q |
629 |
ttgtccattcaaata |
643 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30413369 |
ttgtccattcaaata |
30413355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 526 - 611
Target Start/End: Complemental strand, 24055955 - 24055870
Alignment:
| Q |
526 |
atttcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttgagt |
611 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
24055955 |
atttcatacacagtcctctccatccaatattcctgtgggagctcccacaaccgaatccatacttgtgtatgcgtttgtcgctgagt |
24055870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 375 - 752
Target Start/End: Complemental strand, 8224621 - 8224244
Alignment:
| Q |
375 |
caccggaaatgcataaccttcccgttccaccataacttcataaaaaaggttctcaaaaaggtctaagtccttcaaaactttggcataatgaccaaacaat |
474 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||| ||| || ||| ||||| | | ||| || ||||||| |||| ||||||| |
|
|
| T |
8224621 |
caccgaaaatgcataaccttcccattccaccataacttcataaaaaatgttttcggtaagttctaaattcaccaagaccctggcatagtgactaaacaat |
8224522 |
T |
|
| Q |
475 |
ctgttcttagtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccaca |
574 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||| ||||||| |||||||||||||| ||||||||||| ||||||| || |||||||||| | |
|
|
| T |
8224521 |
atgtttttagtaacattatcaattaacaatggtattccgatagccta-gctatttcatacaattttctctccatctaatattcttgcagcaattcccata |
8224423 |
T |
|
| Q |
575 |
accttatccaaacttgagtatgtgtttgtcgttgagtatgtgctttaaaatcttttgtccattcaaatagacacatcacacccgacttcaaattgaccgt |
674 |
Q |
| |
|
| | |||| |||||| ||||||||| |||||||| ||||| | ||||| ||||| ||||| ||||||||| ||||||||||| |||||||||||| || |
|
|
| T |
8224422 |
atcgtatcaaaacttaagtatgtgtctgtcgttgtgtatgaacgttaaagtctttcgtccactcaaatagatgcatcacacccggcttcaaattgactgt |
8224323 |
T |
|
| Q |
675 |
gccaaatggccatactgcttgcaagtcttcatggttggcaaaagagaacttataatacccacg-cccaacgaaagcata |
752 |
Q |
| |
|
||| | || |||||| ||| ||| |||||| | |||||| ||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
8224322 |
gcctagtgcccataccgctcacaattcttcacaggaagcaaaaacgaactcataatacccacgacccaaagaaagcata |
8224244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 170 - 379
Target Start/End: Complemental strand, 8226152 - 8225945
Alignment:
| Q |
170 |
gagccaatgccagagggattatcctttgttttcgatccttgcgtggactgcttctgcgaaagttcaattttttccctttattaattggaagaaccttctc |
269 |
Q |
| |
|
||||| ||| |||| ||||||||||| |||| ||||| || |||| || |||| |||| ||||| ||||||||| |||| || ||||||| |||||| |
|
|
| T |
8226152 |
gagcctatgtcagaaggattatccttc--tttccatcctagcatggattgtttctacgaatgttcagttttttccccttatcaacgggaagaatcttctc |
8226055 |
T |
|
| Q |
270 |
ttgtttgtctgannnnnnnggatgtaaccaccagcaagatgttatattatgtccaatacttttacagtgagagcaaaagtcaggcagacactcgtattca |
369 |
Q |
| |
|
| ||||| || ||||||||||||| ||||||||||| |||||| |||||| |||||||||||| |||||| |||||||| | || ||||||| |
|
|
| T |
8226054 |
tcttttgtgtgctttttttggatgtaaccaccggcaagatgttacattatggccaatagttttacagtgagtgcaaaattcaggcagtcccttgtattca |
8225955 |
T |
|
| Q |
370 |
atttccaccg |
379 |
Q |
| |
|
|||||||||| |
|
|
| T |
8225954 |
atttccaccg |
8225945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 364 - 573
Target Start/End: Complemental strand, 34516577 - 34516366
Alignment:
| Q |
364 |
tattcaatttccaccggaaatgcataaccttcccgttccaccataacttcataaaaaaggttctcaaaaaggtctaagtccttcaaaactttggcataat |
463 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||| |||||||||| ||||||||||||| || | |||| ||||| ||| |||| || ||| |||| | |
|
|
| T |
34516577 |
tattcaatctccaccgggaatgcgaaaccttcgtgttccaccatcacttcataaaaaatgtctttggaaagatctaaatccatcaataccttgacatagt |
34516478 |
T |
|
| Q |
464 |
gaccaaacaatctgttctt--agtaacattatcaattaacaacggagttcggatagcccctgctatttcatacaaggttctctccatccaatattcctgt |
561 |
Q |
| |
|
| |||||||| |||| || ||||||||| | |||||| ||||| || | || ||||| ||| |||| | |||| |||||||| ||| |||||||||| |
|
|
| T |
34516477 |
gtccaaacaacctgtgttttcagtaacattcttaattaataacggtgtcccgacagcccttgcgattttaaacaaagttctctcaatctaatattcctgc |
34516378 |
T |
|
| Q |
562 |
ggcaattcccac |
573 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34516377 |
ggcaattcccac |
34516366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 12451639 - 12451697
Alignment:
| Q |
541 |
ctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgt |
599 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || | |||||||| |||| |||||| |
|
|
| T |
12451639 |
ctctccatccaatattcttgtggcaattcccataaacggatccaaacctgagcatgtgt |
12451697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 517 - 572
Target Start/End: Complemental strand, 98335 - 98280
Alignment:
| Q |
517 |
gcccctgctatttcatacaaggttctctccatccaatattcctgtggcaattccca |
572 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| || || |||||||| |
|
|
| T |
98335 |
gcccctgcaatttcatataaggttctctccatccaatattcttgcggtaattccca |
98280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 529 - 605
Target Start/End: Original strand, 4092 - 4168
Alignment:
| Q |
529 |
tcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcg |
605 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||| || | | |||||| ||||| || |||||||| |
|
|
| T |
4092 |
tcatacaaggtcctctccatccaatattcttgtggtaattcccataatcgaacccaaacctgagtgtgagtttgtcg |
4168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 608
Target Start/End: Complemental strand, 12158326 - 12158247
Alignment:
| Q |
529 |
tcatacaaggttctctccatccaatattcctgtggcaattcccacaaccttatccaaacttgagtatgtgtttgtcgttg |
608 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| |||||||| || | | |||||| ||||| || ||||||||||| |
|
|
| T |
12158326 |
tcatacaatgtcctctccatccaatattcttgtggtaattcccataaacgaacccaaacctgagtgtgagtttgtcgttg |
12158247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 572
Target Start/End: Complemental strand, 77443 - 77389
Alignment:
| Q |
518 |
cccctgctatttcatacaaggttctctccatccaatattcctgtggcaattccca |
572 |
Q |
| |
|
|||||||||| || || || || ||||||||||||||||| |||||||||||||| |
|
|
| T |
77443 |
cccctgctatctcctataaagtcctctccatccaatattcttgtggcaattccca |
77389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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