View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_11 (Length: 412)
Name: NF8556_low_11
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 21371291 - 21371034
Alignment:
| Q |
19 |
ttgttctcttccagttactccatgcatggagcttcctggtgaaccctcaatatcagccattgttatagctgtttttagtaatgagaggggtgtaaataga |
118 |
Q |
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| T |
21371291 |
ttgttctcttccagttactccatgcatggagcttcctggtgaaccctcaatatcagccattgatatagctgtttttagtaatgagaggggtgtaaataga |
21371192 |
T |
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| Q |
119 |
aaagtaattggtttaggatgtgatgaatattgttgtgaagaatgaagaaggagtgtgttttatttatagtatgttaaagcgttgacaatgtaatgagcca |
218 |
Q |
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| T |
21371191 |
aaggtaattggttt-gaatgtgatgaatattattgtgaagaatgaagaaggagtgtgttgtatttatagtatgttaaagcgttgacaatgtaatgagcca |
21371093 |
T |
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| Q |
219 |
attgagttctcaaaggttggatagaaagatttaaactaattaatcttgattaattaaca |
277 |
Q |
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| T |
21371092 |
attgagttctcaaaggttggatagaaagatttaaagtaattaatcttgattaattaaca |
21371034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 21386266 - 21386523
Alignment:
| Q |
19 |
ttgttctcttccagttactccatgcatggagcttcctggtgaaccctcaatatcagccattgttatagctgtttttagtaatgagaggggtgtaaataga |
118 |
Q |
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| T |
21386266 |
ttgttctcttccagttactccatgcatggagcttcctggtgaaccctcaatatcagccattgatatagctgtttttagtaatgagaggggtgtaaataga |
21386365 |
T |
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| Q |
119 |
aaagtaattggtttaggatgtgatgaatattgttgtgaagaatgaagaaggagtgtgttttatttatagtatgttaaagcgttgacaatgtaatgagcca |
218 |
Q |
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| T |
21386366 |
aaggtaattggttt-gaatgtgatgaatattattgtgaagaatgaagaaggagtgtgttgtatttatagtatgttaaagcgttgacaatgtaatgagcca |
21386464 |
T |
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| Q |
219 |
attgagttctcaaaggttggatagaaagatttaaactaattaatcttgattaattaaca |
277 |
Q |
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| T |
21386465 |
attgagttctcaaaggttggatagaaagatttaaagtaattaatcttgattaattaaca |
21386523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 269 - 405
Target Start/End: Original strand, 21386555 - 21386691
Alignment:
| Q |
269 |
taattaacagggaaataactcatggtatatcccaaaggttcatatataggtgacatcatccactgtagagattcttaatcataattgaatatactgaaat |
368 |
Q |
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| T |
21386555 |
taataaacagtgaaagaactcatggtatatcccaaaggttcatatgtaggtgacatcatccactgtagagattcttaatcataattgaatatactgaaat |
21386654 |
T |
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| Q |
369 |
aatatttatatgtacgattgttcaatgcctctaattg |
405 |
Q |
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| T |
21386655 |
aatacttatatgtacgattgttcaatgcctctaattg |
21386691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 21371002 - 21370901
Alignment:
| Q |
269 |
taattaacagggaaataactcatggtatatcccaaaggttcatatataggtgacatcatccactgtagagattcttaatcataattgaatatactgaaat |
368 |
Q |
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|||| ||||| |||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371002 |
taatgaacagtgaaagaactcatggtatatcccaaaggttcatgtgt--gtgacatcatccactgtagagattcttaatcataattgaatatactgaaat |
21370905 |
T |
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| Q |
369 |
aata |
372 |
Q |
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|||| |
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| T |
21370904 |
aata |
21370901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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