View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_14 (Length: 395)
Name: NF8556_low_14
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 13714136 - 13714507
Alignment:
| Q |
8 |
cattgagaaggaccccaatacccagcatatctcatctccctctcacaactatgtggaggtaatcaatccaaactactgatagtttgaaactgttctcttg |
107 |
Q |
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| T |
13714136 |
cattgagaaggaccccaatacccagcatatctaatctccctctcacaactatgtggaggtaatcaatccaaactagtgatagtttcaaacttttctcttg |
13714235 |
T |
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| Q |
108 |
gtagtgttttagtcatcatattatagccattattatcagtatgaactttagctaactctaacaacatagcatctataacgccatgtgttcaatcatatct |
207 |
Q |
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| T |
13714236 |
gtagtgttttagtcatcatattatagccattattatcagtatgaaatttagctaactctaacaacatagcatctataacgccatgtattcaatcatatct |
13714335 |
T |
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| Q |
208 |
cgaatcaatgtgtttgaacctattacaagaagttggattctcaccaagatgaatagcactttgactattagcaaatatttgttcttcacccttgggagtt |
307 |
Q |
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| T |
13714336 |
cgaatcaatgtgtttgaacctattacaaaaagttggattcttaccaagatgaatagcactttgactattaacaaatatttgttcttcacccttgggagtt |
13714435 |
T |
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| Q |
308 |
gaactttcaatggagatgggtaatgagctaataggtctagcccttagtgcgggtttttagactactccaaag |
379 |
Q |
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| T |
13714436 |
gaactttcaatggagatgggtaatgagctaataggtctagcccttagtgcgggtttctagactacttcaaag |
13714507 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 6856818 - 6856753
Alignment:
| Q |
115 |
tttagtcatcatattatagccattattatcagtatgaactttagctaactctaacaacatagcatc |
180 |
Q |
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| T |
6856818 |
tttagtcatcatatcataactactataatcaatatgaactttagataactccaacaacttagcatc |
6856753 |
T |
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