View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_15 (Length: 387)
Name: NF8556_low_15
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 36811935 - 36811563
Alignment:
| Q |
1 |
tcgaatatgactgtgatttaaaacatcgggaataaattatataatattagtatattaccttaaggtacatgtcaatagctctatagagattgtcatcact |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36811935 |
tcgaatatgactgtgatttaaaacttcgggaataaattatataatattagtatattaccttaaggtacatgtcaatagctctatagagattgtcatcact |
36811836 |
T |
|
| Q |
101 |
atctctagcattttgtggcaatacttcaacaagcaatttgaaactttccactgtgagcttctgatcccttgcaacttgtgatagataaccatccaccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36811835 |
atctctagcattttgtggcaatacttcaacaagcaatttgaaactttccactgtgagcttctgatcccttgcaacttgtgatagataaccatccaccaac |
36811736 |
T |
|
| Q |
201 |
tttccaacaatgtgaacttttgcagccgaattacttgaaatgccaagaacataagattgtaacactttaacaacaacatcaacatcatacaaagaatctt |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36811735 |
cttccaacaatgtgaacttttgcagcagaattacttgaaatgccaagaacataagattgtaacactttaacaacaacatcaacatcatacaaagaatctt |
36811636 |
T |
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| Q |
301 |
tatctccttgattcttaaccaaaagatcttgaacacaacactgctccaaaatcaaaaccactcttgtctctag |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36811635 |
tatctccttgattcttaaccaaaagatcttgaacacaacactgctccaaaatcaaaaccactcttgtctctag |
36811563 |
T |
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