View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8556_low_17 (Length: 369)
Name: NF8556_low_17
Description: NF8556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8556_low_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 22989952 - 22990301
Alignment:
| Q |
20 |
atcacttccacaacattctcaccaacttttttcaggatctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggcgac |
119 |
Q |
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| T |
22989952 |
atcacttccacaacgttctcaccaacttttttcaggatctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggggac |
22990051 |
T |
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| Q |
120 |
agcgccagtgcggcctgttacaatttatttcaatgaagttgtcaaaatcgaaacactggaagtgtttgcatgtgcgccctttaacaggagtcttgattcg |
219 |
Q |
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| T |
22990052 |
agcgccagagcggcctgtaacaatttatttcaatgaagttgtcaaaatcgaagcactggaagtgtttgcatgtgcgccctttaacaggagtcttgattcg |
22990151 |
T |
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| Q |
220 |
tgtcaatcctatgggacagttaagtgagattcgcgactccccctccatgatatctgaatctgaatattcaagagtagactgaacataatctagtggaagc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
22990152 |
tgtcaatcctatgggacagttaagtgagattcgcgactccccctccatgatatctgaatctgaatattcaagagtagactgaacataatctggaggaagc |
22990251 |
T |
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| Q |
320 |
ttgggcggcaatgatgcatcaacataactcatataggcaacaagtataat |
369 |
Q |
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| T |
22990252 |
tcgggtggcaaggatgcatcaacataactcatataggcaacaagtataat |
22990301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 2541660 - 2541553
Alignment:
| Q |
58 |
ctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggcgacagcgccagtgcggcctgttacaatttatttcaatgaag |
157 |
Q |
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||||| ||||||||||||||||| ||||||||||||| ||||| | | |||||||| | ||||||||| ||||| ||| ||||||||| ||||||| |
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| T |
2541660 |
ctcaatcatgtttctgtcaagacgaatatctgtatagcagacaggccgagtgcaatgggggcagcgccaggatggcctcttaaaatttattttaatgaag |
2541561 |
T |
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| Q |
158 |
ttgtcaaa |
165 |
Q |
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|||||||| |
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| T |
2541560 |
ttgtcaaa |
2541553 |
T |
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